Ephemeral vegetation drivers of occupancy dynamics of Mojave desert tortoises (Gopherus agassizii)
Data files
Jul 25, 2025 version files 96.67 KB
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OpenResearchData__occupancy_vegetation.csv
28.10 KB
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OpenResearchData__vegannual_longformat.csv
61.27 KB
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README.md
7.31 KB
Abstract
Understanding the factors associated with the probability of a species occurring across the landscape has become a foundational component of wildlife management and monitoring. Static factors (e.g., plot characteristics that are consistent across time, such as topography or permanent woody vegetation)are often investigated, but dynamic vegetation factors may also drive apparent occupancy dynamics as energy-minimizing species respond to ephemeral changes in food resources. We analyzed the role of ephemeral forbs and grasses in the occupancy dynamics of Mojave desert tortoises (Gopherus agassizii), expecting higher occupancy when food plants (forbs) were abundant and lower occupancy when non-food plants (grasses) were widespread. We found that none of the static plot-level factors explained initial occupancy in the first year, but vegetation factors did influence interannual occupancy dynamics. Plots that were unoccupied in a given year were 14.4% less likely to become occupied in the following year for every 1% point increase in grass cover within the plot (i.e., a negative effect of grass cover on annual plot occupancy). Conversely, occupied plots were 72.5% less likely to become unoccupied in the subsequent year for every 1% point increase in the cover of forbs and we unexpectedly found that occupied plots were 76.9% less likely to become unoccupied for every additional grass species present in the plot. However, credible intervals were wide, indicating strong but inconsistent patterns of ephemeral vegetation driving occupancy dynamics of Mojave desert tortoises.
Dataset DOI: 10.5061/dryad.hdr7sqvws
Description of the data and file structure
Files and variables
File: OpenResearchData__vegannual_longformat.csv
Description:
Variables
- Plot: The 4-ha survey plot
- Year: The year of the vegetation survey
- Value: The value of the 'community metric'.
- Community metric: Derived metric; Species richness = number of unique species across all quadrats within the plot, Plant abundance = number of individual plants of each 'plant group' across all quadrats within the plot, and Percent cover = the mean percent cover of each plant group across all quadrats within the plot
- Plant group: Forb (herbaceous) versus grass species
File: OpenResearchData__occupancy_vegetation.csv
Description:
Variables
- site: Simple integer identifier for each Plot
- Plot: Alphanumeric identifier for each occupancy sampling plot
- yvis1.1: Yes(1)/No(0) of whether a Mojave desert tortoise was observed in year one, survey one at the plot.
- yvis1.2: Yes/No of observing Mojave desert tortoise in year one, survey two
- yvis1.3: Same as preceding, subsequent survey
- yvis1.4: Same as preceding, subsequent survey
- yvis1.5: Same as preceding, subsequent survey
- yvis1.6: Same as preceding, subsequent survey
- yvis1.7: Same as preceding, subsequent survey
- yvis2.1: Yes(1)/No(0) of whether a Mojave desert tortoise was observed in year two, survey one at the plot.
- yvis2.2: Same as preceding, subsequent survey
- yvis2.3: Same as preceding, subsequent survey
- yvis2.4: Same as preceding, subsequent survey
- yvis2.5: Same as preceding, subsequent survey
- yvis2.6: Same as preceding, subsequent survey
- yvis2.7: Same as preceding, subsequent survey
- yvis3.1: Yes(1)/No(0) of whether a Mojave desert tortoise was observed in year three, survey one at the plot.
- yvis3.2: Same as preceding, subsequent survey
- yvis3.3: Same as preceding, subsequent survey
- yvis3.4: Same as preceding, subsequent survey
- yvis3.5: Same as preceding, subsequent survey
- yvis3.6: Same as preceding, subsequent survey
- yvis3.7: Same as preceding, subsequent survey
- Vegetative %: Total percent vegetative cover across the Plot
- Veg_area_creosote: Total percent creosote cover (Larrea tridentata) across the Plot
- Veg_area_bursage: Total percent bursage cover (Ambrosia dumosa) across the Plot
- visit1.1.day: Calendar day-of-year for first year, first survey of the Plot
- visit1.2.day: Same as preceding, subsequent survey
- visit1.3.day: Same as preceding, subsequent survey
- visit1.4.day: Same as preceding, subsequent survey
- visit1.5.day: Same as preceding, subsequent survey
- visit1.6.day: Same as preceding, subsequent survey
- visit1.7.day: Same as preceding, subsequent survey
- visit2.1.day: Calendar day-of-year for second year, first survey of the Plot
- visit2.2.day: Same as preceding, subsequent survey
- visit2.3.day: Same as preceding, subsequent survey
- visit2.4.day: Same as preceding, subsequent survey
- visit2.5.day: Same as preceding, subsequent survey
- visit2.6.day: Same as preceding, subsequent survey
- visit2.7.day: Same as preceding, subsequent survey
- visit3.1.day: Calendar day-of-year for third year, first survey of the Plot
- visit3.2.day: Same as preceding, subsequent survey
- visit3.3.day: Same as preceding, subsequent survey
- visit3.4.day: Same as preceding, subsequent survey
- visit3.5.day: Same as preceding, subsequent survey
- visit3.6.day: Same as preceding, subsequent survey
- visit3.7.day: Same as preceding, subsequent survey
- visit1.1.temp: Ambient temperature (C) at the start of the occupancy survey, first year and first survey
- visit1.2.temp: Same as preceding, subsequent survey
- visit1.3.temp: Same as preceding, subsequent survey
- visit1.4.temp: Same as preceding, subsequent survey
- visit1.5.temp: Same as preceding, subsequent survey
- visit1.6.temp: Same as preceding, subsequent survey
- visit1.7.temp: Same as preceding, subsequent survey
- visit2.1.temp: Ambient temperature (C) at the start of the occupancy survey, second year and first survey
- visit2.2.temp: Same as preceding, subsequent survey
- visit2.3.temp: Same as preceding, subsequent survey
- visit2.4.temp: Same as preceding, subsequent survey
- visit2.5.temp: Same as preceding, subsequent survey
- visit2.6.temp: Same as preceding, subsequent survey
- visit2.7.temp: Same as preceding, subsequent survey
- visit3.1.temp: Ambient temperature (C) at the start of the occupancy survey, third year and first survey
- visit3.2.temp: Same as preceding, subsequent survey
- visit3.3.temp: Same as preceding, subsequent survey
- visit3.4.temp: Same as preceding, subsequent survey
- visit3.5.temp: Same as preceding, subsequent survey
- visit3.6.temp: Same as preceding, subsequent survey
- visit3.7.temp: Same as preceding, subsequent survey
- stationppt.2014: Total precipitation (mm) at nearest weather station from preceding Oct2013-Jan2014
- stationppt.2015: Total precipitation (mm) at nearest weather station from preceding Oct2014-Jan2015
- stationppt.2016: Total precipitation (mm) at nearest weather station from preceding Oct2015-Jan2016
- 2014.forb.spprich: Plot-level forb species richness from 'OpenResearchData_vegannual longformat.csv'
- 2015.forb.spprich: Plot-level forb species richness from 'OpenResearchData_vegannual longformat.csv'
- 2016.forb.spprich: Plot-level forb species richness from 'OpenResearchData_vegannual longformat.csv'
- 2014.grass.spprich: Plot-level grass species richness from 'OpenResearchData_vegannual longformat.csv'
- 2015.grass.spprich: Plot-level grass species richness from 'OpenResearchData_vegannual longformat.csv'
- 2016.grass.spprich: Plot-level grass species richness from 'OpenResearchData_vegannual longformat.csv'
- 2014.nativeforb.abund: Plot-level native forb abundance from 'OpenResearchData_vegannual longformat.csv'
- 2015.nativeforb.abund: Plot-level native forb abundance from 'OpenResearchData_vegannual longformat.csv'
- 2016.nativeforb.abund: Plot-level native forb abundance from 'OpenResearchData_vegannual longformat.csv'
- 2014.nativegrass.abund: Plot-level native grass abundance from 'OpenResearchData_vegannual longformat.csv'
- 2015.nativegrass.abund: Plot-level native grass abundance from 'OpenResearchData_vegannual longformat.csv'
- 2016.nativegrass.abund: Plot-level native grass abundance from 'OpenResearchData_vegannual longformat.csv'
- 2014.forb.cover: Plot-level percent forb cover from 'OpenResearchData_vegannual longformat.csv'
- 2015.forb.cover: Plot-level percent forb cover from 'OpenResearchData_vegannual longformat.csv'
- 2016.forb.cover: Plot-level percent forb cover from 'OpenResearchData_vegannual longformat.csv'
- 2014.grass.cover: Plot-level percent grass cover from 'OpenResearchData_vegannual longformat.csv'
- 2015.grass.cover: Plot-level percent grass cover from 'OpenResearchData_vegannual longformat.csv'
- 2016.grass.cover: Plot-level percent grass cover from 'OpenResearchData_vegannual longformat.csv'
Access information
Other publicly accessible locations of the data:
- None
Data was derived from the following sources:
- Field observations and measurements
