Data from: Further fragmentation of Timonius: Reinstatement of Abbottia based on morphology and molecular sequence data
Data files
Jul 21, 2026 version files 1.29 MB
Abstract
The circumscription of the Paleotropical dioecious and species-rich genus Timonius Rumph. ex DC. nom. cons. has long been based on a restricted combination of morphological features, namely, valvate corolla aestivation and drupes bearing multiple, free, single-seeded pyrenes. Previous studies, focused on different taxonomic problems in tribe Guettardeae, found Timonius to be either monophyletic or polyphyletic, but these studies relied only on a limited number of species. Based on these, the phylogeny of Timonius and related genera is here reconstructed using sequences obtained from five nuclear and plastid molecular loci (ETS, ITS, atpB-rbcL, rps16 and trnT-F) to provide a better understanding of its generic boundaries. The phylogenetic results generally affirm the unnaturalness of Timonius, and its species fall into three well-supported clades: 1) Abbottia clade, containing representatives of T. subgen. Abbottia; 2) Timonius clade, containing the majority of the sampled species of Timonius; and 3) the New Caledonian endemic T. platycarpus is recovered in an isolated position that is sister to Tinadendron. These findings are supported by morphological characters and molecular apomorphies, implying the necessity to resurrect the genus Abbottia with an amended diagnosis. Diagnostic morphological characters of the Timonius clade are also presented toward a more stable taxonomy of the genus.
The files presented here are the raw data that were used to reconstruct the phylogeny of Timonius.
Dataset DOI: 10.5061/dryad.hqbzkh1zj
Description of the data and file structure
The data collected was based on Sanger Sequencing data of two nuclear (ETS & ITS), and three plastid (atpB-rbcL, rps16, trnT-F) sequence data.
Files and variables
File: Supplementary_Information_1_GenBank_Accessions.txt
Description: GenBank accessions used in this study. The markers used are ITS, ETS, atpB-rbcL, trnT-F, and rps16.
File: Supplementary_Information_2_Complete_Sequence.txt
Description: This supplementary information contains the complete aligned sequences of all the gene regions used in this study.
File: Supplementary_Information_3_GBlocks_with_MCH.txt
Description: This supplementary information contains the curated aligned sequences using GBlocks to remove ambiguous sites in the complete sequence alignment.
File: Supplementary_Information_4_List_of_Coded_MCH.txt
Description: This supplementary information contains the characteristics of the coded microstructural characters in the molecular data sets. The coding of characters is based on Kelchner (2000), and Simmons and Ochotorena.
Code/software
Notepad++
