Data from: Mesoclimatic origin affects alpine plant germination but not its plasticity
Data files
Jun 25, 2026 version files 62.73 KB
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Dryad_germination.csv
57.20 KB
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README.md
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Abstract
Aim: Mountain ecosystems are disproportionately exposed to global warming, which may put alpine plant species in particular at risk. Plant species’ migration and persistence depend on successful seed regeneration, with demographic traits such as germination being strongly sensitive to both present and ancestral climate. Germination may, thus, present a major bottleneck to alpine plant species under climate change, or they may cope through phenotypic plasticity. However, little is known about alpine plant germination under warming, its plasticity, and whether any of these are co-determined by the climatic origin of the seeds.
Location: Eastern Central Alps in Tyrol, Austria
Time Period: 2022-2023
Methods: We investigated intraspecific variation in germination proportion and timing of six co-occurring alpine plant species from different micro- and mesoclimatic origins as response to three temperature treatments using growth chambers. Elevation as well as topographic strata were used as proxies for mesoclimate and mean soil temperature, growing- as well as freezing-degree-days for microclimate.
Major taxa studied: Alpine plant species
Results: Our results show that species were plastic in germination proportion and timing in response to temperature, with all species germinating in the warmest treatment. Micro- and mesoclimatic origin affected germination traits but did not co-determine species responses to the temperature treatments. We also demonstrated maternal climatic effects, with seeds from warmer microclimates displaying higher phenotypic plasticity. Furthermore, seeds originating from colder mesoclimates, i.e., the upper elevation range, generally germinated less.
Main conclusions: Our results suggest that global warming will impact alpine plant regeneration from seeds through concurrent effects during germination, climatic origin as well as shifts in germination timing. Importantly, our results indicate that regeneration from seed may contribute to defining the upper elevational limit of alpine plant species through climatic origin and maternal microclimatic effects.
Dataset DOI: 10.5061/dryad.j0zpc86v2
Description of the data and file structure
We investigated intraspecific variation in germination fraction and timing of six co-occurring alpine plant species from different micro- and mesoclimatic origins (topographic strata, elevation, FDD0, GDD0, mean soil temperature) as response to three temperature treatments using growth chambers. Seeds were germinated under controlled conditions in petri dishes in plant growth chambers from Percival Scientific (Model SE-59L1 SED; 60% air humidity) under three different temperature treatments: 17/7°C, 21/11°C , 25/15°C. The higher temperature was set during 15 hours of light and the lower temperature during the nine hours of darkness.
Files and variables
File: Dryad_germination.csv
Variables
ID (petri dish), plot, species ( Bart_alp = Bartsia alpina, Hel_ver = Helictochloa versicolor, Phy_hem = Phyteuma hemisphaericum, Pri_min = Primula minima, Rho_fer = Rhododendron ferrugineum, Sil_aca = Silene acaulis subsp. exscapa), mother plant, temperature treatment, strata (topographic strata), elevation, FDD0, GDD0, Mean_soil_temp, Initial = initial number of seeds, Seed1-Seed10 germination time of the seed in days, with 0 indicating that this seed did not germinate during the experiment.
Code/software
We analyzed seed regeneration using four separate response variables: (i) germination proportion per petri dish (one dish per mother plant × treatment), (ii) average time to germination (days) across germinated seeds per petri dish, (iii) plasticity in germination proportion, and (iv) plasticity in time to germination. For each response variable, generalized linear models (GLMs) were fitted using different proxies for climatic origin in separate models to avoid collinearity. Proxies for climatic origin were elevation, topographic strata, mean soil temperature, growing degree days above 0 °C (GDD0), and freezing degree days below 0 °C (FDD0). GDD0 was calculated as the cumulative sum of daily mean soil temperatures exceeding 0 °C, and FDD0 as the cumulative sum of the absolute values of daily mean soil temperatures below 0 °C. Mean soil temperature, GDD0, and FDD0 were calculated from 1 January to 9 August 2022 (until seed collection). This period was chosen to capture climatic conditions relevant for seed production and maturation. Only soil temperature data from plots, from which seeds were collected (see Table S1), were used to calculate climatic proxies.
For the response variables, germination proportion and time to germination, each GLM included one proxy for climatic origin, treatment, species, as well as their interactions as predictors. Species, treatment, and topographic strata were treated as categorical predictors, whereas elevation, mean soil temperature, GDD0, and FDD0 were treated as continuous. GLMs for germination proportion were calculated using quasibinomial error distributions, and GLMs for time to germination using gamma error distributions with a log-link.
Plasticity was calculated as the relative distance plasticity index (RDPI) from Valladares et al. (2006). RDPI quantifies phenotypic plasticity as environmentally induced relative trait changes based on a shared genetic background, here, the shared mother. Depending on the mating system of the species, RDPI therefore corresponds to comparisons among half- or full siblings, the latter for species capable of self-fertilization, such as here R. ferrugineum. Comparisons among genetically more similar offspring provide a more conservative estimate of phenotypic plasticity by minimizing genetic variance. RDPI calculations are based on pairwise comparisons of a trait x across seeds from the same mother plant and subjected to temperature treatments. For each mother plant j, absolute differences in the values of trait x dij → i′j′ were derived between treatment i and i′ for all pairs of this mother. These absolute differences were rescaled by dividing them by the sum of the two trait values of the focal pair (xi′j′ + xij), in order to incorporate that variation of a trait increases with increasing trait values. RDPI is finally derived as the average rescaled absolute trait differences (RDPIx = Σ(dij → i′j′/(xi′j′ + xij))/n, where n is the total number of pairwise comparisons). RDPI ranges from 0 (no plasticity) to 1 (maximal plasticity). High phenotypic plasticity, as expressed by the RDPI, indicates high trait variation, regardless of its fitness consequences.
For the response variables plasticity in germination proportion and plasticity in time to germination, separate GLMs were fitted, each including one proxy for climatic origin, species, as well as their interactions as predictors. GLMs for plasticity in germination proportion and plasticity in time to germination were calculated using quasibinomial error distributions.
The fit of all GLMs was assessed using Nagelkerke R2, a pseudo-R2 metric, with the R package piecewiseSEM (Lefcheck 2016). Post hoc pairwise comparisons were conducted using the R package emmeans (Lenth 2021) with false discovery rate correction for multiple tests (Benjamini & Hochberg 1995). All analyses were performed with the statistical software R version 4.0.2 (R Core Team 2024).
Study area and seed collection
Seeds originated from Schrankogel, located in the eastern Central Alps in Tyrol, Austria. The bedrock is composed of siliceous material, mostly amphibolite and gneiss. The regional climate is temperate sub-continental with an average annual temperature of 2.5°C and an average annual rainfall of 889 mm within the measurement period 1980–2021 (meteorological station Obergurgl, 1950 m a.s.l., 20 km south of the study area).
In July and August 2021 and 2022, 900 plots of 1 × 1 m² were established across the non-forest subalpine, alpine, and nival zones of Schrankogel as part of a broader research infrastructure (Chytrý et al. 2024; Helm et al. 2024). Each plot was equipped with a soil temperature logger (Geoprecision M-Log5W-SIMPLE) recording temperature at hourly intervals at approximately 10 cm depth. Plot positions were selected following a stratified random sampling design that considered 20 different topographic strata. These topographic strata were computed using K-means clustering of fine-scale maps of elevation, micro- and macro-slope, a fine-scale and a coarse-scale topographic position index (TPI), potential incoming solar radiation (May to September sum), and the maximum Normalized Difference Vegetation Index (NDVI; computed from Sentinel-2 satellite images of July and August 2020 at 10 m resolution). Micro- and macro-slopes were computed with a 3 m x 3 m and 99 m x 99 m neighborhood size, respectively. Fine-scale and coarse-scale TPI were computed as multi-scale versions (SAGA GIS (Conrad et al. 2015) implementation following Guisan et al. (1999)) with 1 m to 10 m neighborhood radius with three steps and with 1 m to 100 m neighborhood radius with four steps, respectively. In this study, we focused on a subset of four of these 20 topographic strata situated along the same macro-topographic hillslope in the alpine zone (Supporting information, Figure S1).
Seeds of six species (Rhododendron ferrugineum, Helictochloa versicolor, Silene acaulis subsp. exscapa, Phyteuma hemisphaericum, Primula minima, and Bartsia alpina) were collected between 10th and 13th August 2022. Species were chosen based on their occurrence and their seed phenology within the four focal strata during the collection. We aimed to sample seeds from nine mother plants (biological replicates) per species and stratum, ideally distributed across three plots with three mother plants per plot. The number of sampled plots and mother plants per plot varied depending on the availability of fruiting mothers and because not all species occurred in all strata (Table S1). Plots spanned a distance of approximately 895 m along the selected macro-topographic hillslope, with a minimum distance between plots of 16 m, covering an elevation range from 2205 m to 2775 m. Mother plants were selected in a regular-random manner within a 5 m radius of plots, but excluding areas belonging to a different stratum. To increase the number of mother plants, 16 mother plants across species were sampled at greater distance (max. 50 m) from the nearest plot. In total, we included seeds of 192 mother plants in this study (Table S1).
Germination experiment
In 2023, seeds were germinated under controlled conditions in petri dishes in plant growth chambers (Percival Scientific Model SE-59L1 SED: photoperiod 15 hours light/ 9 hours darkness; 60% air humidity) under three different temperature treatments: 17/7°C, 21/11°C, 25/15°C. The higher temperature was set during the light hours and the lower temperature during the darkness.
For each mother plant, well-developed seeds were equally divided among the three temperature treatments, enabling half- or full-sibling comparisons across treatments. Ten seeds per mother plant and treatment were placed together in a single petri dish (one dish per mother plant × treatment) on filter paper, without any growing medium other than water. For 11 mothers, less than 30 well-developed seeds were available, which were all used by equally distributing them among the three treatments. Helictochloa versicolor consistently produced less than 30 seeds, so that it was not included in the 21/11°C treatment. Instead, its seeds per mother plant were equally divided between the 17/7°C and the 25/15°C treatment.
Temperatures of our warmest treatment reflect daily field conditions in summer in the Alps of Lombardy (Northern Italy), used in a previous study on alpine plant germination (Tudela-Isanta et al. 2018a). We chose the other treatments at intervals of 4°C, which is close to the maximum difference in soil temperature among the strata (4.2°C) when averaging over the summer months (June-August) in 2022. The temperature differences mother plants may have experienced based on differences in elevation was maximum 3.4°C, assuming a lapse rate of ca 0.6°C per 100 m.
Phyteuma hemisphaericum and B. alpina received a cold stratification at 0°C in complete darkness for 10 and 11 weeks, respectively, following Tudela-Isanta et al. (2018a) who documented physiological dormancy in P. hemisphaericum and morphophysiological dormancy in B. alpina. The difference in stratification duration between these two species resulted from an unplanned delay in the start of the stratification treatment. For the remaining species, no (cold) stratification was applied because available information on dormancy type and stratification requirements is scarce or inconclusive. All seeds were stored at room temperature until the start of cold stratification or the start of the germination experiment, which was simultaneous for all species.
During the germination experiment, petri dishes were checked three times per week. Each seed was monitored individually, with the date of germination scored upon first emergence of the radicile. Petri dishes were watered as needed to remain constantly moist. The experiment lasted 42 days (six weeks), by which time germination had largely levelled off across species and treatments.
Seed quality was assessed at three stages: during field collection, during the setup of the germination experiment, and after the experiment using cut-tests. In the field and again when seeds were placed in petri dishes under an optical microscope, only well-developed, visually intact seeds without signs of deformation or infestation were selected, which may have resulted in a bias towards heavier seeds. After the germination experiment, all non-germinated seeds were cut and visually assessed under an optical microscope for the presence of a well-developed embryo and signs of infestation or tissue degradation. The non-germinated seeds were neither empty nor infested with insects or fungi, but all contained well-developed embryos, supporting the reliability of the first two quality assessments.
