Data from: Functional and phylogenetic implications of forest Mesophication in temperate hardwood forests
Data files
Mar 17, 2026 version files 79.42 KB
-
CommunityComposition.csv
42.84 KB
-
LitterFlammability.csv
12.39 KB
-
OverstoryTraitData.csv
18.12 KB
-
README.md
6.06 KB
Abstract
Forest mesophication involves the shifting of plant communities from fire-adapted, drought tolerant systems to those dominated by species better adapted to shaded, closed-canopy environments. While commonly understood from a taxonomic perspective, the phylogenetic underpinnings and functional implications of forest mesophication have received less quantitative testing. We applied phylogenetic and functional trait data to legacy datasets of changing forest composition in Wisconsin from the latter half of the 20th century. In both the 1950s and 2000s, forests demonstrated a phylogenetically clustered structure, with closely related species occupying similar sites. The inclusion of functional traits into models accounted for 42% of the variance explained by this clustering in the 1950s and just 16% in the 2000s. This diminished explanatory value of functional traits corresponds with overall shifts in functional diversity, with the majority of sites being dissimilar from their 1950s trait syndrome. Contemporary trait syndromes were defined by broad declines in drought and fire tolerance, litter flammability, and an increase in leaf traits associated with acquisitive resource strategies. Such shifts identify the diminished capacity of traits to explain phylogenetic clustering, provide broadscale, quantifiable support for the hypothesized functional implications of mesophication, highlight key species that land managers can deliberately target to meet land management goals, and outline future directions of how interspecific trait variation influence shifting patterns of composition in temperate forests.
https://doi.org/10.5061/dryad.j3tx95xrx
Description of the data and file structure
Trait data is provide at the individual/replicate level, with functional trait data all being collected from a single specimen and flammability replicates referring to data collected from ~15g litter samples.
Community composition data is comprised of overstory frequency data collected by Curtis (1959) and Rogers (2005) for southern WI temperate forests. Environmental data from latitude, canopy Basal Area, and soil nutrient analysis are provided, with units present in column titles.
Files and variables
File: CommunityComposition.csv
Description: Composition data, with each row representing a site and each column representing site-level environmental variables or species frequency within the overstory individuals (n=80) at each site
Variables
- Site: Site Identification Number
- LAT: Latitude
- LONG: Longitude
- pH: Soil pH
- X..OM: % Organic Matter in soil
- X..Sand: soil % sand
- X..Silt: soil % silt
- X..Clay: soil % clay
- X..N: soil % nitrogen
- P..ppm.: soil phosphorus content (ppm)
- K.ppm.: soil potassium content (ppm)
- Ca.ppm.: soil calcium content (ppm)
- Mg.ppm.: soil magnesium content (ppm)
- region: southern or northern forests (only southern forests in this PEL dataset)
- 1950BA: Summation of species average Basal Area for site in 1950
- 2005BA: Summation of species average Basal Area for site in 2005
- year: sampling effort, either 1950s or 2000s
- Acer_negundo: frequency of Acer negundo
- Acer_rubrum: frequency of Acer rubrum
- Acer_saccharum: frequency of Acer saccharum
- Carpinus_caroliniana: frequency of Carpinus caroliniana
- Carya_cordiformis: frequency of Carya cordiformis
- Carya_ovata: frequency of Carya ovata
- Celtis_occidentalis: frequency of Celtis occidentalis
- Fagus_grandifolia: frequency of Fagus grandifolia
- Juglans_nigra: frequency of Juglans nigra
- Ostrya_virginiana: frequency of Ostrya virginiana
- Populus_grandidentata: frequency of Populus grandidentata
- Populus_tremuloides: frequency of Populus tremuloides
- Prunus_serotina: frequency of Prunus serotina
- Quercus_alba: frequency of Quercus alba
- Quercus_macrocarpa: frequency of Quercus macrocarpa
- Quercus_rubra: frequency of Quercus rubra
- Quercus_velutina: frequency of Quercus velutina
- Tilia_americana: frequency of Tilia americana
- Ulmus_rubra: frequency of Ulmus rubra
File: LitterFlammability.csv
Description: Flammability data of overstory species, with each row representing a burn trial and each column representing characteristics of each trial and flammability metrics
Variables
- Sample: Replicate ID
- Species: Binomial species nomenclature
- Genus: Genus
- Epithet: Species epithet
- Replicate: Replicate # within species
- Initial.Mass: Initial Sample Mass (g)
- Max.Flame.Height: Maximum flame height (cm)
- Flame.Duration: duration of visible flames (s)
- Smolder.Duration: duration of visible embers (s)
- Remaining.Mass: mass of sample after burning (g)
- Percent.Consumed: Initial.Mass/Remaining.Mass *100
- Consumption.Rate: (Initial.Mass-Remaining/Mass)/Flame.Duration
- Depth: Average litter bed depth (cm)
- D1: Litter bed depth measure 1 (cm)
- D2: Litter bed depth measure 2 (cm)
- D3: Litter bed depth measure 3 (cm)
- D4: Litter bed depth measure 4 (cm)
- Fireline.Intensity: kW/m calculated as I = 258 * Max.Flame.Height^2.17
- Curl: Average Leaf Curl (mm)
File: OverstoryTraitData.csv
Description: Trait values for each individual replicate of every overstory species. Rows represent an individual, and columns represent sample attributes and functional traits.
Variables
- species: four letter code for each species, with 2 letters from the beginning of the genus and 2 letters from the beginning of the epithet. ex.* Acer negundo = ACNE*
- genus: genus
- family: family
- replicate: within species replicate number
- id: Sample ID combining species and replicate number ex.* ACNE1*
- LMA: Leaf Mass per Area (g/m^2)
- LA: Leaf Area (cm^2)
- AlAs: Leaf Area Sapwood Area ratio (m2:cm2)
- Stem: Stem density (g/cm^3)
- Sapwood: Sapwood density (g/cm^3)
- TLP: Turgor Loss Point (MPa)
- K: Stem specific maximum hydraulic conductivity (g*s-1MPa-1mm-1)
- Kleaf: leaf area adjusted stem specific maximum hydraulic conductivity (g s-1m-1MPa-1)
- logLA: logarithmic transformation of leaf area
File: SupplementalFigures.docx (Zenodo - Supplemental Information)
Description: Supplemental figures for the publication
Figures
- Figure 1: a map detailing the locations of all sample sites included in analyses
- Figure 2: Histograms detailing the change in species richness (left) and effective number of species (right) at sites included in analyses
- Table 1: a table of the results of similarity percentage analysis (SIMPER)(Clark 1993), detailing which species contribute to differences in forests between the 1950s and 2000s. Highlight species show species with significant differences in frequency between surveying efforts.
- Figure 3: Principle components analysis of flammability trait data (LitterFlammability.csv)
- Figure 4: Principle components analysis of mean species trait data that includes flammability and bark thickness traits
- Table 2: Results of phylogenetic signal using species trait means in r packages phytools. Models Testing for Significance of Phylogenetic Attraction. Highlighted traits show a Pagel’s λ > .5
- Table 3: Table of pglmm model results testing model improvement when including phylogenetic attraction terms. Models included only random effects shown
Access information
Other publicly accessible locations of the data:
- Wisconsin Angiosperm Flora available at https://doi.org/10.5061/dryad.kf6q10b (Spalink et al. 2018)
Raw trait data are provided for reproducibility. Community composition data is provided in wide format, with sites as rows and environmental variables/species as columns.
