Data and code from: The genus Coryphodon in Europe: Contribution of the new exceptional material from Le Quesnoy (northern France, early Eocene, MP7)
Data files
Jun 30, 2026 version files 379.32 MB
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README.md
5.69 KB
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SupplementaryDataA1.xlsx
15.87 KB
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SupplementaryDataA2.xlsx
15.71 KB
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SupplementaryDataA3.xlsx
13.06 KB
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SupplementaryDataA4.txt
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SupplementaryDataA5.zip
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SupplementaryDataB1.tif
369.81 MB
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SupplementaryDataB1.txt
3.08 KB
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SupplementaryDataB1.xlsx
12.79 KB
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SupplementaryDataB2.R
48.33 KB
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SupplementaryDataB3.R
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SupplementaryDataC1.txt
4.95 KB
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SupplementaryDataC2.nx
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SupplementaryDataC3.tiff
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SupplementaryDataC4.zip
8.11 MB
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SupplementaryDataC5.zip
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Abstract
Pantodonts form an extinct group of herbivorous eutherian mammals. It contains 8 families for 23 genera, from the early Paleocene to the late Eocene, including Bemalambda, Barylambda, Titanoides, Pantolambda or Pantolambdodon. In Europe, one genus only is known, Coryphodon, with three species: C. eocaenus, C. anthracoideus and C. oweni. The Le Quesnoy material (Oise, Northern France, MP7) reported here offers a first opportunity to evaluate intraspecific and specific variability of the genus Coryphodon in Europe. With more than 150 dental and postcranial specimens, it is the most important assemblage for the genus in Europe. While describing this material, we have been able to observe an overlap between the presumed diagnostic character states of the three species C. eocaenus, C. anthracoideus and C. oweni (M3 entoconid more or less expressed, M3 lingual cingulum continuous or discontinuous). Moreover, a biometric approach reveals an overlap of body-size ranges for these three species, whereas this character was presumed diagnostic. Our study indeed supports that C. anthracoideus and C. oweni are synonymous with the type species Coryphodon eocaenus Owen, 1845, which therefore should be the only European species of Coryphodon. Finally, we developed the first cladistic and Bayesian phylogenetic analyses of the Coryphodontidae; they show the paraphyly of the genus Coryphodon, as well as a specialized bilophodont tendency within Coryphodontidae, which is particularly pronounced within later Asian genera (Eudinoceras, Asiocoryphodon, Hypercoryphodon and Heterocoryphodon).
Dataset DOI: 10.5061/dryad.jm63xsjph
Description of the data and file structure
SUPPLEMENTARY DATA
SUPPLEMENTARY DATA A: MATERIAL
A1: List of Le Quesnoy material
A2: List of comparison material available at MNHN
A3: List of material which have been observed at IRSNB
A4: Diagnoses from Lucas (1984)
A5: Measurement tables
SUPPLEMENTARY DATA B: BIOMETRY
B1: Size variability of teeth along the dental row
B2: R script for biometry
B3: R script for morphometrics
ANNEXE C: PHYLOGENY
C1: List of characters
C2: Taxa-characters matrix
Also available in MorphoBank: https://www.morphobank.org/permalink/?P6165
C3: List of transformations from consensus strict
C4: Bayesian phylogeny files
C5: BioGeoBEARS analysis files
Files and variables
File: SupplementaryDataA1.xlsx
Description: List of Le Quesnoy material
Variables
- List of the 153 specimens of Coryphodon eocaenus from Le Quesnoy
File: SupplementaryDataA2.xlsx
Description: List of comparison material from MNHN
Variables
- List of comparison Coryphodon material from MNHN
File: SupplementaryDataA3.xlsx
Description: List of material which have been observed at IRSNB
Variables
- List of Coryphodon material which have been observed at IRSNB
File: SupplementaryDataA4.txt
Description: Diagnoses of Coryphodon eocaenus, C. anthracoideus, and C. oweni from Lucas (1984)
File: SupplementaryDataA5.zip
Description: 10 XLSX tables of measurements (the fourth lower premolar, the isolated three lower molars isolated, the combined two first lower molars, the combined three lower molars, the isolated three upper molars, the combined three upper molars) + 1 XLSX table explaining the file names, column names, and units.
File: SupplementaryDataB1.txt; SupplementaryDataB1.tif; SupplementaryDataB1.xlsx
Description: Size variability of teeth along the dental row among Le Quesnoy and all European Coryphodon material. Including statistics output data and corresponding figure.
File: SupplementaryDataB2.R
Description: R script for biometry on Coryphodon cheek teeth (coefficient of variation, Kruskal-Wallis test, Wilcoxon test).
File: SupplementaryDataB3.R
Description: R script for 3D morphometrics on Coryphodon M3
File: SupplementaryDataC1.txt
Description: List of phylogenetic characters and character states
File: SupplementaryDataC2.nx
Description: Taxa-characters matrix
File: SupplementaryDataC3.tiff
Description: List of transformations from consensus strict (phylogenetic parsimony analysis run on PAUP)
File: SupplementaryDataC4.zip
Description: Bayesian phylogeny files (run on BEAST)
- Code_coryphodon.R (R script)
- Coryphodon.log (output file: MCMC convergence diagnostics, posterior probabilities, model parameters, runtime information)
- Coryphodon.xml (input configuration of the Bayesian phylogenetic analysis)
- MCC_Coryphodon.nex (Maximum Clade Credibility tree from the Bayesian phylogenetic analysis)
- Phylogenie_matrice_V4.trees (posterior distribution of trees)
File: SupplementaryDataC5.zip
Description: BioGeoBEARS analysis files (run on R)
- BGB_Coryphodon.R (R script)
- geo_data_cory.txt (input file: geographic distribution data)
- MCC_cory.tre (input file: phylogenetic tree)
- Coryphodonidae_BAYAREALIKE_M0_unconstrained_v1.Rdata (output file: results of the BAYAREALIKE model (M0, unconstrained) analysis)
- Coryphodonidae_BAYAREALIKE_vs_BAYAREALIKE+J_M0_unconstrained_v1.pdf (output file: comparison of BAYAREALIKE and BAYAREALIKE+J models (M0, unconstrained))
- Coryphodonidae_BAYAREALIKE+J_M0_unconstrained_v1.Rdata (output file: results of the BAYAREALIKE+J model (M0, unconstrained) analysis)
- Coryphodonidae_DEC_M0_unconstrained_v1.Rdata (output file: results of the DEC model (M0, unconstrained) analysis)
- Coryphodonidae_DEC_vs_DEC+J_M0_unconstrained_v1.pdf (output file: comparison of DEC and DEC+J models (M0, unconstrained))
- Coryphodonidae_DEC+J_M0_unconstrained_v1.Rdata (output file: results of the DEC+J model (M0, unconstrained) analysis)
- Coryphodonidae_DIVALIKE_M0_unconstrained_v1.Rdata (output file: results of the DIVALIKE model (M0, unconstrained) analysis)
- Coryphodonidae_DIVALIKE+J_M0_unconstrained_v1.Rdata (output file: results of the DIVALIKE+J model (M0, unconstrained) analysis)
- restable_v1.Rdata (output file: summary table of results for all BioGeoBears models)
- Table_results_BGB.csv (output file: summary table of results for the BioGeoBears analysis)
- teststable_v1.Rdata (output file)
Code/software
File: SupplementaryDataA1.xlsx
Description: Excel
File: SupplementaryDataA2.xlsx
Description: Excel
File: SupplementaryDataA3.xlsx
Description: Excel
File: SupplementaryDataA4.docx
Description: Word
File: SupplementaryDataA5.zip
Description: Excel
File: SupplementaryDataB1.docx
Description: Word
File: SupplementaryDataB2.R
Description: R
File: SupplementaryDataB3.R
Description: R
File: SupplementaryDataC1.docx
Description: Word
File: SupplementaryDataC2.nx
Description: Notepad (or others)
File: SupplementaryDataC3.docx
Description: Word
File: SupplementaryDataC4.zip
Description: BEAST
File: SupplementaryDataC5.zip
Description: R
