A novel loss-of-function KCNB1 gene variant in a twin with global developmental delay and seizures
Data files
Oct 09, 2024 version files 247.17 KB
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Figure_1C_-__Kv2.1__Kv2.1-P385L__Kv2.1-Kv2.1-P385L_-_IV.xlsx
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Figure_1D_-__Kv2.1___Kv2.1-Kv2.1-P385L_-_Normalized_Current.xlsx
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Figure_1E_-__Kv2.1__Kv2.1-P385L__Kv2.1-Kv2.1-P385L_-_Peak_Current__40_mV.xlsx
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Figure_1F_-__Kv2.1__Kv2.1-P385L__Kv2.1-Kv2.1-P385L_-_EM.xlsx
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Figure_3B_-_Kv2.1-Kv2.1-Y380S-P385L_-_IV.xlsx
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Figure_3D_-_Kv2.1-Kv2.1-P385L-E1_-_IV.xlsx
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Figure_3D_-_Kv2.1-Kv2.1-P385L-E2_-_IV.xlsx
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Figure_4B_-_Kv2.1__Kv2.1-P385T___Kv2.1-Kv2.1-P385T_-_IV.xlsx
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README.md
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Abstract
Human voltage-gated potassium (Kv) channels are expressed by a 40-member family of genes essential for normal electrical activity and with numerous associations and linkages to excitability disorders. Function-altering sequence variants in the KCNB1 gene, which encodes the neuronally expressed Kv2.1 channel, are associated with neurodevelopmental disorders including developmental delay with or without epileptic activity. Here, we describe a 40-month-old fraternal twin who presented with severe neurodevelopmental delay. Electroencephalogram recordings at 19 months of age revealed poor sleep architecture and the presence of multifocal epileptiform discharges. The individual’s fraternal twin was neurotypical and there was no family history of neurodevelopmental delay or seizures. Whole genome sequencing at 33 months of age for the proband revealed a de novo variant in KCNB1 [c.1154C>T/p.Pro385Leu], encoding a proline to leucine substitution at residue 385, in the extracellular region immediately preceding Kv2.1 transmembrane segment 6 (S6). Cellular electrophysiological analysis of the effects of the gene variant in heterologously expressed Kv2.1 demonstrated that homozygous Kv2.1-P385L channels were completely nonfunctional. Channels generated by 50/50 expression of wild-type Kv2.1 and Kv2.1-P385L to mimic the heterozygous status of the proband revealed a partially dominant-negative, 81% reduction in current magnitude. The dramatic loss of function in Kv2.1 is the most likely cause of the severe developmental delay and seizure activity in the proband, further enriching our phenotypic understanding of KCNB1 developmental encephalopathies.
Source Data for manuscript: A novel loss-of-function KCNB1 gene variant in a twin with global developmental delay and seizures
The datasets included are the original Excel files used to generate each panel for figures 2-4 in this manuscript. The title of each Excel file is labeled to directly correspond to the figure in the manuscript:
Figure Number & panel > Channel Investigated > Condition > Parameter Measured
The data contained within this repository are those obtained from cellular electrophysiology recordings. We used two-electrode voltage clamp (TEVC) electrophysiology and the Xenopus laevis oocyte expression system to record the electrical activity of wild-type Kv2.1 channels and mutant Kv2.1 channels (P385L and P385T) identified by genetic screening of a patient exhibiting global developmental delay and seizures. Xenopus laevis oocytes were injected with cRNA encoding for Kv2.1, Kv2.1-P385L, and Kv2.1-P385T and were incubated at 16 degrees for 24 hrs prior to recording using TEVC. These measurements allow us to characterize the biophysical properties of the mutants P385L and P385T in order to better understand how these mutations may alter the physiology of the patient and provide an underlying rationale for their condition.
The parameters that we measured to characterize the biophysical properties of the Kv2.1 mutants P385L and P385T are as follows:
Current-voltage (IV) curve
This is a graph representing the relationship between the electrical current (flow of ions) and voltage applied across a device (the cell membrane). In electrophysiology, I-V curves are used to study the activity of biological cells, in this case Xenopus oocytes expressing wild-type and mutant Kv2.1 channels. The data contained in the I-V curve excel files were measured from the peak of the prepulse current generated by a voltage protocol that starts at -80 mV and increases in +10 mV increments until +40 mV. All raw values are in microamps (uA).
Normalized current-voltage (IV) curve
This graph also represents the relationship between the electrical current and the voltage applied across a device. However, rather than plotting the raw data values for an I-V curve, we normalized the values to the peak current value obtained at +40 mV. Raw data values are in microamps (uA).
Resting membrane potential
The resting membrane potential (RMP) is the electrical potential difference across a cell's membrane at rest. The RMP is determined by the concentration of ions across the membrane and the membrane permeability to each type of ion. Here, we measured the RMP (EM) of unclamped Xenopus laevis oocytes expressing Kv2.1, P385L, or P385T channels and reported the values in millivolts (mV).
Current density comparisons
These graphs were generated by taking the peak current values obtained at +40 mV from the I-V curves generated for Kv2.1, Kv2.1-P385L, or Kv2.1-P385T channels. These values were then compared using a dot-plot graph in order to compare what effect the mutations Kv2.1-P385L and Kv2.1-P385T had on the ability of the channel to generate currents compared to wild-type Kv2.1. All values are in microamps (uA).
Statistics
All statistical analysis were conducted as either paired t-test or one-way ANOVA with Dunnett's correction for multiple comparison.
Additional Information
Excel files with cells with 'n.a' means not applicable. No data was obtained for this cell.
Preparation of channel subunit cRNA preparation and Xenopus laevis oocyte injection
cDNA encoding human KCNB1 was sub-cloned into a Xenopus expression vector (pMAX) incorporating Xenopus laevis β-globin 5’ and 3’ UTRs flanking the coding region to enhance translation and cRNA stability by Genscript (Piscataway, NJ, USA). Mutant KCNB1 constructs were generated by Genscript and subcloned into pMAX as above. cRNA transcripts were generated by in vitro transcription using the T7 mMessage mMachine kit (Thermo Fisher Scientific, Waltham, MA, USA) according to manufacturer’s instructions, after vector linearization with PacI. Stage V and VI defolliculated Xenopus laevis oocytes (Xenoocyte, Dexter, MI, USA) were injected with the channel cRNAs (0.2-2 ng) and incubated at 16 oC in Barth’s solution containing penicillin and streptomycin, with daily washing, prior to two-electrode voltage-clamp (TEVC) recording.
Two-electrode voltage clamp (TEVC)
TEVC was conducted at room temperature with an OC-725C amplifier (Warner Instruments, Hamden, CT, USA) and pClamp10 software (Molecular Devices, Sunnyvale, CA, USA) 24 hours after cRNA injection. Oocytes, in a small-volume oocyte bath (Warner), were viewed with a dissection microscope for cellular electrophysiology. Extracellular bath solution (in mM): 96 NaCl, 4 KCl, 1 MgCl2, 0.3 CaCl2, and 10 HEPES, adjusted to pH 7.6 with TRIS BASE. Solutions were introduced into the oocyte recording bath by gravity perfusion at a constant flow of 1 ml per minute. Pipettes (1-2 MΩ resistance) were filled with 3 M KCl. Current-voltage graphs were measured in response to voltage pulses between -80 mV and +40 mV at 10 mV intervals from a holding potential of -80 mV.
Statistics and Reproducibility
All values are expressed as mean ± SEM. At least 2 batches of oocytes were used per experiment. Multiple comparison statistics were conducted using a One-way ANOVA. Comparison of two groups was conducted using a t-test; all p values were two-sided.
