Puma concolor whole-genome VCF dataset from Florida panther translocation and wild populations in California, Texas, Yellowstone, and Brazil
Data files
May 01, 2026 version files 6.13 GB
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filtered_pumavariants.vcf.gz
5.67 GB
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puma_simple_SIFT_SNPs.vcf.gz
457.90 MB
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README.md
1.19 KB
Abstract
This dataset contains whole-genome variant call format (VCF) files for the puma (Puma concolor) across multiple populations in the Americas. The dataset includes individuals from Florida panthers sampled primarily after the well-documented translocation and genetic rescue event, as well as publicly available genomes from wild populations in California, Texas, Yellowstone, and Brazil.
Dataset DOI: 10.5061/dryad.jsxksn0rf
Description of the data and file structure
Files and variables
File: puma_simple_SIFT_SNPs.vcf.gz
Description: SNP variants using Puma yagouaroundi as a reference (GCF_014898765.1_PumYag_genomic.fna)
File: filtered_pumavariants.vcf.gz
Description: SNP variants using Puma concolor as a reference (GCF_003327715.1_PumCon1.0_genomic.fasta)
Code/software
Descriptions of the methods can be found in: https://www.pnas.org/doi/10.1073/pnas.2410945122
Access information
Data was derived from the following sources:
- Reads and code data have been deposited in SRA (PRJNA898112) and GitHub (https://github.com/aguilar-gomez/pumaRescue), respectively.