Non-adapted bacterial infection suppresses plant reproduction
Data files
Nov 25, 2024 version files 57.48 GB
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AlphaFoldPredictions_rawpdbs.zip
4.72 MB
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Metagenomic_sequencing_Krona_analysis.zip
3.52 GB
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README.md
1.62 KB
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RNA-seq_Col_PUB14_CRISPR__UBQ10-PUB14.zip
22.46 GB
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RNA-seq_MgCl2_PXO99A_PXO99ATleAandTleB.zip
31.50 GB
Abstract
Environmental stressors, including pathogens, substantially affect the growth of host plants. However, how non-adapted bacteria influence nonhost plants has not been reported. Here, we reveal that infection of Arabidopsis flowers by Xanthomonas oryzae pv. oryzae PXO99A, a bacterial pathogen causing rice blight disease, suppresses ovule initiation and reduces seed number without causing visible disease symptoms. TleB, secreted by the type VI secretion system (T6SS), interacts with plant E3 ligase PUB14, and disrupts the function of the PUB14-BZR1 module, leading to decreased ovule initiation and seed yield. In the other site, PUB14 concurrently promotes TleB’s degradation. Our findings indicate that bacterial infections in nonhost plants directly repress offspring production. The regulatory mechanism by effectors-PUB14-BZR1 is widely present, suggesting that plants may balance reproduction and defense and produce fewer offspring to conserve resources, thus enabling them to remain in a standby mode prepared for enhanced resistance.
1.Name:AlphaFoldPredictions_rawpdbs.zip
Description:AlphaFold2-predicted protein structure files
Number of pdb files:11
pdb files list:
AtPUB14-BZR1-TleB(DC3000).pdb
BnPUB14-BnBZR1-TleB.pdb
OsPUB12-OsBZR1-TleB(PXO99A).pdb
OsPUB12-OsBZR1-TleB.pdb
PhPUB14-PhBZR1-TleB.pdb
PUB14&BZR1&TleB.pdb
PUB14&BZR1.pdb
PUB14&TleB.pdb
SlPUB14-SlBZR1-TleB.pdb
TaPUB14-TaBZR1-TleB.pdb
ZmPUB14-ZmBZR1-TleB.pdb
2.Name:RNA-seq_Col_PUB14_CRISPR__UBQ10-PUB14.zip
Description:The raw data for the RNA-seqs. The transcriptome contains 3 groups, Col(WT), PUB14_CRISPR(PUB14_crispr), and UBQ10-PUB14(PUB14_OE1).
Raw data expression of 18 samples:
PUB14_crispr_1_1.fq.gz
PUB14_crispr_1_2.fq.gz
PUB14_crispr_2_1.fq.gz
PUB14_crispr_2_2.fq.gz
PUB14_crispr_3_1.fq.gz
PUB14_crispr_3_2.fq.gz
PUB14_OE1_1_1.fq.gz
PUB14_OE1_1_2.fq.gz
PUB14_OE1_2_1.fq.gz
PUB14_OE1_2_2.fq.gz
PUB14_OE1_3_1.fq.gz
PUB14_OE1_3_2.fq.gz
WT_1_1.fq.gz
WT_1_2.fq.gz
WT_2_1.fq.gz
WT_2_2.fq.gz
WT_3_1.fq.gz
WT_3_2.fq.gz
3.Name:Metagenomic_sequencing_Krona_analysis.zip
Description:The raw data for the Krona analysis
Raw data of 2 samples:
S2_1.fq.gz
S2_2.fq.gz
4.Name:RNA-seq_MgCl2_PXO99A_PXO99ATleAandTleB.zip
Description:The raw data for the RNA-seqs. The transcriptome contains 3 groups, MgCl2(control), PXO(PXO99A), and P3234(PXO99ATleAandTleB).
Raw data expression of 18 samples:
MgCl2_1.R1.fq.gz
MgCl2_1.R2.fq.gz
MgCl2_2.R1.fq.gz
MgCl2_2.R2.fq.gz
MgCl2_3.R1.fq.gz
MgCl2_3.R2.fq.gz
PXO_1.R1.fq.gz
PXO_1.R2.fq.gz
PXO_2.R1.fq.gz
PXO_2.R2.fq.gz
PXO_3.R1.fq.gz
PXO_3.R2.fq.gz
P3234_1.R1.fq.gz
P3234_1.R2.fq.gz
P3234_2.R1.fq.gz
P3234_2.R2.fq.gz
P3234_3.R1.fq.gz
P3234_3.R2.fq.gz
This dataset primarily contains the raw data for the genomics and structural predictions in the article.
