Data and analyses for: Woodlands facilitate reproductive behaviour and niche partitioning in farmland bumblebee communities
Data files
Apr 03, 2026 version files 268.22 KB
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Caste_data.csv
9.78 KB
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Community_data.csv
36.61 KB
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Complete_analyses_-_Allen_et_al_2026.Rmd
157.06 KB
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README.md
4.98 KB
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Worker_size_data.csv
59.79 KB
Abstract
Open and closed woodland likely dominated Europe’s landscapes during the evolution of its contemporary pollinator diversity, contributing distinct floral and non-floral resources, and cooler and darker microclimates, to otherwise treeless environments. As such, we would expect present-day, generalist pollinator species, such as farmland bumblebees, to exploit woodland resources to differing degrees, and for evolutionary adaptations, such as species’ light sensitivity, to accord with relative use of shaded understories. We would also expect exploitation to differ between the pollen-collecting and reproductive castes. However, a lack of temperate woodland sampling has meant these predictions remain largely untested. To address this knowledge gap, we sampled bumblebee activity (activity-density) with blue vane traps in shaded woodland understories and in sun-exposed field margins and woodland canopies from May to July, at 12 sites across agricultural landscapes in Norfolk, England. We then examined relative levels of activity in the understory according to bumblebee species and their light sensitivity, and bumblebee caste. We found that levels of activity in the understory were highly species-specific and greatest for Bombus hortorum L. and B. pratorum L.. Across species, activity levels in the two sun-exposed habitats (relative to the understory) were highly positively correlated with each other, and the most light-sensitive species were more active in the understory. Additionally, the reproductive castes were more active in the understory than workers, especially when temperatures reached heatwave thresholds. These results suggest that woodlands (1) support bumblebee reproductive behaviour, (2) have played a key role in facilitating niche differentiation, mediated by the provision of shade, and (3) could be important for maintaining bumblebee diversity in agricultural landscapes – and under a warming climate – with attendant benefits for pollination services.
Dataset DOI: 10.5061/dryad.jwstqjqqb
Description of the data and file structure
Data and analyses for: Woodlands facilitate reproductive behaviour and niche partitioning in farmland bumblebee communities
Files and variables
File: Complete_analyses_-_Allen_et_al_2026.Rmd
Description: R code to run all analyses presented in manuscript.
File: Community_data.csv
Description: All data contributing to models 1 - 12 of the manuscript (Table 1).
Variables
- period: sampling period (I = 'Early May', II = 'Late May', III = 'Mid-June', IV = 'Mid-July')
- site: sampling site ID
- habitat: sampled habitats ('open', 'understory' and 'canopy'; note, 'open' = field margin)
- trap: trap location ID
- lat: latitude (trap position)
- long: longitude (trap position)
- tot_bees: trap catch (total bee abundance in a trap)
- Bom_r: abundance of Bombus reproductives (queens and males - non-parasitic species only)
- Bom_w: abundance of Bombus workers
- sp_Bpra: abundance of Bombus pratorum
- sp_Bpas: abundance of Bombus pascuorum
- sp_Bter: abundance of Bombus terrestris
- sp_Blap: abundance of Bombus lapidarius
- sp_Bhor: abundance of Bombus hortorum
- sp_Bhyp: abundance of Bombus hypnorum
- sp_Bluc: abundance of Bombus lucorum
- sp_Bjon: abundance of Bombus jonellus
- sp_Bsyl: abundance of Bombus sylvestris
- sp_Bves: abundance of Bombus vestalis
- sp_Bbar: abundance of Bombus barbutellus
- sp_Bcam: abundance of Bombus campestris
- Bombus: abundance of Bombus individuals of unknown species
- solitary: abundance of non-corbiculate ('solitary') bees
- Amel: abundance of Apis mellifera
- flora: floral index (floral cover at trap location)
File: Caste_data.csv
Description: All data contributing to models 13 - 21 of the manuscript (Table 1). Species' caste-counts were only included if sufficiently high (see Materials and Methods - Relative activity of castes across habitats).
Variables
- period: sampling period (I = 'Early May', II = 'Late May', III = 'Mid-June', IV = 'Mid-July')
- site: sampling site ID
- habitat: sampled habitats ('open', 'understory' and 'canopy'; note, 'open' = field margin)
- Bom_r: abundance of Bombus reproductives (queens and males - non-parasitic species only)
- Bom_w: abundance of Bombus workers
- Bom_tot: abundance of all non-parasitic Bombus
- pro_Bom_r: proportion of total non-parasitic Bombus that are reproductives
- pas_w: abundance of Bombus pascuorum workers
- pas_r: abundance of Bombus pascuorum reproductives
- pas_tot: abundance of all Bombus pascuorum
- pro_pas_r: proportion of Bombus pascuorum that are reproductives
- pra_w: abundance of Bombus pratorum workers
- pra_r: abundance of Bombus pratorum reproductives
- pra_tot: abundance of all Bombus pratorum
- pro_pra_r: proportion of Bombus pratorum that are reproductives
- hor_w: abundance of Bombus hortorum workers
- hor_r: abundance of Bombus hortorum reproductives
- hor_tot: abundance of all Bombus hortorum
- pro_hor_r: proportion of Bombus hortorum that are reproductives
- hyp_w: abundance of Bombus hypnorum workers
- hyp_r: abundance of Bombus hypnorum reproductives
- hyp_tot: abundance of all Bombus hypnorum
- pro_hyp_r: proportion of Bombus hypnorum that are reproductives
- lap_w: abundance of Bombus lapidarius workers
- lap_r: abundance of Bombus lapidarius reproductives
- lap_tot: abundance of all Bombus lapidarius
- pro_lap_r: proportion of Bombus lapidarius that are reproductives
- ter_w: abundance of Bombus terrestris workers
- ter_r: abundance of Bombus terrestris reproductives
- ter_tot: abundance of all Bombus terrestris
- pro_ter_r: proportion of Bombus terrestris that are reproductives
File: Worker_size_data.csv
Description: All data contributing to models 22 - 31 of the manuscript (Table 1).
Variables
- period: sampling period (I = 'Early May', II = 'Late May', III = 'Mid-June', IV = 'Mid-July')
- site: sampling site ID
- trap: trap location ID
- specimen: worker specimen ID
- species: species
- habitat: sampled habitats ('open', 'understory' and 'canopy'; note, 'open' = field margin)
- ITD: intertegular distance of worker specimen (microns)
Note: blanks cells are used to indicate "inapplicable"
Code/software
The script is formatted for R Markdown in R studio (R version 4.3.2).
Annotations are provided throughout the script which cover library loading; dataset loading and cleaning; analyses (including diagnostics); and figure creation.
This script performs all the analyses presented in "Woodlands facilitate reproductive behaviour and niche partitioning in farmland bumblebee communities".
