Mitochondrial carbonic anhydrase-VB inhibition rescues brain endothelial stress and memory in Alzheimer’s disease models
Data files
Sep 10, 2026 version files 56.53 MB
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albumin_qualitative_images.zip
10.84 MB
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CD31_20x_image_hippo_and_cx.zip
23.29 MB
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CD31_ccasp3_colocalization_hippo_images.zip
726.61 KB
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graphpad_files_for_labarchives_nl_2026.zip
2.90 MB
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ICC_Mitrotracker_and_cytochrome_C_amyloid_and_4ITP.zip
1.32 MB
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ICC_WT_and_CAVBKO_cytocrhomeC_and_mitotracker_images.zip
312.73 KB
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Neun_IHC_images_hippocampus.zip
15.44 MB
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README.md
5.03 KB
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western_blot_full_membrane_images.pdf
1.70 MB
Abstract
Alzheimer’s Disease (AD) is a devastating neurodegenerative disorder with no effective cure, characterized by the cerebral parenchymal and vascular accumulation of aggregated Amyloid-β (Aβ) and hyperphosphorylated tau. Cerebrovascular and mitochondria dysfunction are early causal events in the progression of AD. Previous studies support that inhibiting carbonic anhydrases (CA) may prevent mitochondrial and cerebrovascular dysfunction in AD models. Here, we selectively target the mitochondrial CA isoform CA-VB by pharmacological and genetic manipulation, in human cerebral microvascular endothelial cells (hCMEC) and we confirm the protective effects of the CA-V inhibitor in AD mice. CA-V inhibition and CA-VB KO prevent Aβ induced mitochondria-mediated endothelial apoptosis, loss of barrier resistance, and hCMEC inflammatory activation. Strikingly, CA-V inhibition also mitigates caspase activation and endothelial cell activation in the brains of 3xTg AD mice, resulting in preserved memory function. Our results demonstrate that selective CA-V inhibition is an effective and promising strategy against AD-mediated cerebrovascular pathology, neuroinflammation and cognitive impairment.
Dataset DOI: 10.5061/dryad.k0p2ngfnc
Description of the data and file structure
Manuscript submission, raw data
Graph-pad files zipped and organized by figure number 1-8 into folders.
Graphpad files can be opened using the Graphpad Prism Software, which also has a free trial version.
Each graph pad file is saved in their figure folder under the name of their experimental output. The numbers in the files are the graphed values post-analysis of raw values. Depending on the experiment, raw values were calculated into fold change or % change of control and then graphed. The statistical test for each graph is displayed in the same graph pad file, along with the graph.
eg) Figure1 folder: cCasp3 quantification is the graph quantifying %area of cCasp3 from figure 1. The numbers are displayed by treatment group via columns. Statistical tests and values are also displayed in the same Graphpad file.
The images selected for panels throughout the manuscript are organized into folders containing their single channels and merged images, named as the respective names in the manuscript figures.
Full western blot membranes to visualize entire blot/membrane are organized into a pdf with a description underneath each.
Naming conventions:
In vitro experimental conditions
Ctrl, no treated cells
Q22, Amyloid-Beta40-22 (Dutch peptide)
4ITP - CA-V inhibitor
In vivo experiments
WT - wildtype
3xTG - Triple transgenic 3xTG mice Alzheimer's disease mouse model
WT+4ITP - treatment from 6-16 months of age
3xtg+4ITP - treatment 6-16 months of age
Files and variables
File: western_blot_full_membrane_images.pdf
Description: File with each western blot membrane organized by figure number. Uncropped western blot membranes.
File: graphpad_files_for_labarchives_nl_2026.zip
Description: Graph pad files of the results organized by figure number. Each file displays the numbered values that makeup the final graph as well as the statistical test done to get that result.
File: CD31_ccasp3_colocalization_hippo_images.zip
Description: Images of single channel as well as merged and zoomed merge of Figure 6 panel.
Staining of cCASP3 and CD31 colocalization in the hippocampus of WT, 3xTG, and 3xTG mice treated with 4ITP (as in Methods). CD31 is represented in red and cCASP3 is represented in green. The %Area of colocalized cCAS3 and CD31 was quantified with HALO imaging software. Original magnification 60x.
File: ICC_Mitrotracker_and_cytochrome_C_amyloid_and_4ITP.zip
Description: Images of single channel as well as merged of in vitro ICC images of cytochrome C in green, MitoTracker in Red and DAPI in blue in hCMEC/D3 cells
IF images depict the loss of Mito-tracker signal (in red) observed in CMEC challenged with Q22 indicating a loss of mitochondrial membrane potential. The release of cytochrome C (green) is visualized as a diffused, cytosolic signal (indicated with arrows) in Q22-treated cells, compared to untreated cells (ctrl). Original magnification: 100x.
File: ICC_WT_and_CAVBKO_cytocrhomeC_and_mitotracker_images.zip
Description: Images of single channel as well as merged of in vitro ICC images of cytochrome C in green, MitoTracker in Red and DAPI in blue. WT vs CA-VB KO hCMEC/D3 cells
IF of CA-VB KO vs WT hCMEC to detect mitochondrial membrane potential (Mito-tracker, red) as well as cytochrome C (Cyto C, green), in hCMEC challenged with Q22 for 16 hours. Zoom images of the merge signal at the bottom depict altered mitochondrial network with perinuclear mitochondria in Q22-treated hCMEC, but not in CA-VB KO cells. Original magnification:100x
File: CD31_20x_image_hippo_and_cx.zip
Description: Blood vessel analysis within hippocampus of WT, 3xTG treated and non-treated. Merged images of each group. CD31 red, DAPI blue. 20x images of hippocampus and cortex.
20x images of WT, 3xTG, and 3xTG + 4ITP cerebral vessels stained with CD31 in red, DAPI in blue.
File: albumin_qualitative_images.zip
Description: Qualitative analysis of blood vessel leakage. CD31 in red and albumin in green. Yellow indicates colocalization.
Representative images of co-staining CD31 and blood protein Albumin (green) in the hippocampus of WT, 3xTG, and 3xTG + 4ITP mice. Microhemorrhages are observed in 3xTG mice (indicated with arrows) and prevented in 3xTG-treated mice. Original magnification 60x.
File: Neun_IHC_images_hippocampus.zip
Description: Representative images of NeuN (green) and DAPI (blue) in the hippocampus of WT, 3xTG, and 3xTG mice treated with 4ITP. Original magnification 60x.
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
