Nitrogen addition weakens drought-driven coupling between plant, arthropod, and soil nematode functional groups
Data files
Apr 10, 2026 version files 489.77 KB
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All_soil_plant_and_fauna_variables.xlsx
24.39 KB
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Plant-arthropod-nematode-feeding_functional_group.xlsx
458.41 KB
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README.md
6.97 KB
Abstract
The concurrent increase in drought and atmospheric nitrogen deposition has profoundly impacted multitrophic biodiversity and ecosystem functioning in grasslands. Despite the well-documented individual effects of reduced precipitation and nitrogen enrichment, their interactive effects, especially on multitrophic cascading responses (e.g., plant, nematode, and arthropod communities), remain largely unknown.
Using a four-year field experiment in a typical steppe of Inner Mongolia, we explored the effects of three drought scenarios (intense drought, excluding 100% of rainfall in June; reduced precipitation frequency, reducing rainfall events by 50% without changing total rainfall from June to August; and chronic drought, excluding 50% of each rainfall event from June to August) and nitrogen addition (+10 g N m–2 yr–1) on species diversity, functional group abundance, and functional group associations within and between trophic levels, including plant, ground-dwelling arthropod and soil nematode communities, as well as their relationships with grassland productivity.
We found that: (1) Drought and nitrogen addition had contrasting effects on multitrophic species diversity, functional group abundance, and grassland productivity. Chronic drought significantly reduced productivity independent of nitrogen, while nitrogen addition enhanced it. Intense drought increased the abundance of bacterivorous and fungivorous nematodes, but this trend was absent with nitrogen addition. Reduced precipitation frequency had no significant effect on multitrophic communities or productivity under any nitrogen condition. (2) Drought, particularly chronic drought, enhanced positive associations between ground-dwelling arthropod and soil nematode functional groups, whereas nitrogen addition was accompanied by a weakening of these functional group interconnections. (3) Increased productivity with nitrogen addition was associated with reduced positive associations within plant functional groups and between arthropod and nematode functional groups, along with increased soil nitrogen availability. Drought was related to lower productivity overall, although it also coincided with reduced associations within plant functional groups, which were related to higher productivity.
Synthesis. Our results indicate that nitrogen deposition under drought scenarios is linked to adverse effects on the abundance and interconnections of multitrophic functional components, highlighting the importance of species interactions across trophic levels for understanding grassland responses to environmental change.
Dataset DOI: 10.5061/dryad.k0p2ngfp3
Description of the data and file structure
This dataset supports the findings of the manuscript titled, "Nitrogen addition weakens drought-driven coupling between plant, arthropod, and soil nematode functional groups". The data were collected from a field experiment investigating the effects of nitrogen addition and drought on plant, arthropod, and nematode communities in a grassland ecosystem.
The archive contains two primary data files (Excel format), organized to link subplot-level biotic and abiotic variables with species/family-level abundance data, along with a README.txt file describing the data structure.
Files and variables
File 1: All_soil_plant_and_fauna_variables.xlsx
Description: This file contains subplot-level measurements of soil properties, plant community metrics, and aggregated fauna data.
Column descriptions:
Site: Experimental unit ID. A total of 40 experimental units (subplots) were established using a split-plot design with 5 blocks, 4 drought treatments (main plots), and 2 nitrogen treatments (subplots).
Treat: Four drought treatments were randomly assigned to each plot.
C, control-ambient precipitation;
ID, intense drought-excluding 100% of precipitation in June and then restoring natural rainfall;
RF, reduced precipitation frequency-reducing the number of precipitation events by 50% without altering total precipitation from June to August;
CD, chronic drought-reducing 50% of the precipitation amount of each precipitation event from June to August.
Every plot was then subdivided into two subplots of 5 m × 2.25 m, assigned randomly as the nitrogen addition and ambient nitrogen treatments.
C+N10, control with nitrogen addition in 10 g N per square meter per year;
ID+N10, intense drought with nitrogen addition in 10 g N per square meter per year;
RF+N10, reduced precipitation frequency with nitrogen addition in 10 g N per square meter per year;
CD+N10, chronic drought with nitrogen addition in 10 g N per square meter per year.
Nitrogen.add: Nitrogen addition treatment, binary variable (0 = No, 1 = Yes).
Drought: Drought treatment, binary variable (0 = No, 1 = Yes).
Block: Block number (1-5).
NO3.N.content: Soil nitrate-nitrogen content in mg per kg of dry soil.
NH4.N.content: Soil ammonium-nitrogen content in mg per kg of dry soil.
Available.nitrogen.content: Total available nitrogen (NO3.N + NH4.N) in mg per kg of dry soil.
Soil.moisture: Gravimetric soil water content in grams of water per 100 g of dry soil (%).
pH: Soil pH.
ANPP: Above-ground net primary productivity of the plant community in grams of dry matter per square meter per year.
Plant.Richness: Plant species richness.
Plant.Shannon: Plant Shannon diversity index.
Plant.Simpson: Plant Simpson diversity index.
Plant.Pielou: Plant Pielou evenness index.
HillPlant.Shannon: Hill number for plant Shannon diversity.
HillPlant.Simpson: Hill number for plant Simpson diversity.
Perennial.tall.bunch.grasses: Abundance (biomass) of perennial tall bunch grasses in grams of dry matter per square meter.
Perennial.short.bunch.grasses: Abundance (biomass) of perennial short bunch grasses in grams of dry matter per square meter.
Perennial.rhizome.grasses: Abundance (biomass) of perennial rhizome grasses in grams of dry matter per square meter.
Perennial.forbs: Abundance (biomass) of perennial forbs in grams of dry matter per square meter.
Annual.and.biennial.herbs: Abundance (biomass) of annual and biennial herbs in grams of dry matter per square meter.
Arthropod.Richness: Ground-dwelling arthropod family richness.
Arthropod.Shannon: Ground-dwelling arthropod Shannon diversity index.
Arthropod.Simpson: Ground-dwelling arthropod Simpson diversity index.
Arthropod.Pielou: Ground-dwelling arthropod Pielou evenness index.
HillArthropod.Shannon: Hill number for ground-dwelling arthropod Shannon diversity.
HillArthropod.Simpson: Hill number for ground-dwelling arthropod Simpson diversity.
Arthropod.Phytophagous: Abundance (individuals) of phytophagous arthropods.
Arthropod.Predatory: Abundance (individuals) of predatory arthropods.
Arthropod.Saprophagous: Abundance (individuals) of saprophagous arthropods.
Arthropod.Omnivorous: Abundance (individuals) of omnivorous arthropods.
Arthropod.Parasitic: Abundance (individuals) of parasitic arthropods.
Nematode.Richness: Soil nematode amplicon sequence variant (ASV) richness.
Nematode.Shannon: Soil nematode Shannon diversity index.
Nematode.Simpson: Soil nematode Simpson diversity index.
Nematode.Pielou: Soil nematode Pielou evenness index.
HillNematode.Shannon: Hill number for soil nematode Shannon diversity.
HillNematode.Simpson: Hill number for soil nematode Simpson diversity.
Nematode.Bacterivorous: Abundance (read counts) of bacterivorous nematodes.
Nematode.Fungivorous: Abundance (read counts) of fungivorous nematodes.
Nematode.Omnivorous.predatory: Abundance (read counts) of omnivorous-predatory nematodes.
Nematode.Plant.parasitic: Abundance (read counts) of plant-parasitic nematodes.
File 2: Plant-arthropod-nematode-feeding_functional_group.xlsx
Description: This file contains the raw abundance data for three taxonomic groups across all experimental subplots: plants at the species level (biomass), ground-dwelling arthropods at the family level (individuals), and soil nematodes at the amplicon sequence variant (ASV) level (read counts). Data are organized by functional group.
Column descriptions:
Group: Specifies the taxonomic category (e.g., "Plant communities", "Arthropod communities", "Nematode communities").
Species: The name of the species or family for plants/ground-dwelling arthropods, or ASV identifier for nematodes (e.g., Stipa grandis, Oedipodidae, ASV_8095).
Columns C to AP: These columns represent individual experimental subplots. Column headers follow the same naming convention as the Site column in File 1 (e.g., C.1, C.2, ID+N10.1, etc.).
Class: The functional group classification for each row (e.g., "Perennial.tall.bunch.grasses", "Arthropod.Phytophagous", "Nematode.Bacterivorous"). See File 1 for the full list of functional group names and their corresponding variables.
Code/software
All analyses were conducted using R version 4.4.1 (R Core Team, 2022).
Usage restrictions
This dataset is made available under a Creative Commons Zero (CC0) waiver, allowing reuse without restriction. Users are asked to cite the associated manuscript (when published) and this Dryad data package in any publications resulting from its use.
Species richness, Hill–Shannon, Hill–Simpson (Chao et al., 2014), and Pielou evenness indices were used to assess the species diversity of plants, soil nematodes, and ground-dwelling arthropods. Hill–Shannon diversity was calculated as eH′ = exp (−Σpi lnpi), Hill–Simpson diversity as 1/ Σpi2, and Pielou evenness as J′ = H′/ ln(S), where pi is the relative abundance of species i, H′ is the Shannon index, and S is species richness. Data from repeated measurements of soil moisture and available nitrogen were averaged prior to statistical analysis to facilitate pairing with other data.
First, linear mixed-effects models ("nlme" package in R) were used to evaluate the effects of drought scenarios, nitrogen addition and their interaction on ANPP, soil available nitrogen, soil moisture, and species diversity and the abundance of functional groups of plants, soil nematodes, and ground-dwelling arthropods, with drought and nitrogen addition as fixed effects and block as a random effect. Data on the abundance of fungivorous nematodes were square root-transformed to meet the assumption of normality and homogeneity of variance. Duncan’s multiple range tests were used for post hoc comparisons among drought scenarios within each nitrogen level, while paired t-tests were used for assessing nitrogen addition effects within each drought scenario.
Second, correlation networks were constructed to examine the associations among species from multiple functional groups across different trophic levels (including perennial tall bunch grasses, perennial short bunch grasses, perennial rhizome grasses, perennial forbs, and annual and biennial herbs; plant-parasitic, bacterivorous, fungivorous, and omnivorous-predatory nematodes; and phytophagous, predatory, omnivorous, saprophagous, and parasitic arthropods) using the R packages "ggplot2", "igraph", and "visNetwork". Within each treatment, pairwise associations were calculated using Spearman's rank correlations among species from each pair of groups. The number of significant positive correlations (P< 0.05) between species in each pair of functional groups was divided by the total number of all possible correlations to obtain the average association strength. Positive and negative associations within and between trophic levels were also quantified based on the correlation networks. Network topological properties, including number of edges, connectance, mean degree, modularity, and average clustering coefficient, were calculated to characterise network structure (Ma et al., 2016). Sensitivity analyses were performed using the false discovery rate (FDR) correction to control for multiple comparisons. Pearson correlations were used to analyse the relationships between positive associations among multitrophic functional groups and ANPP.
Finally, a piecewise structural equation model (SEM) was used to explore the direct and indirect effects of drought and nitrogen addition on ANPP. A priori model was based on the bivariate relationships between ANPP and the diversity and functional group abundance of different biological communities, as well as on correlations among multitrophic functional groups (see Figure S2 for the explanation and illustration of each pathway). The initial model was simplified by removing insignificant pathways and variables according to regression weight estimates (Lefcheck, 2016), retaining key pathways while maintaining a reasonable sample-to-parameter ratio. Model fit was evaluated using Fisher's C statistic (P> 0.05 indicates good fit) and AIC values (Akaike Information Criteria, lower AIC indicates better fit) (Shipley, 2013). The model was constructed using the R package "piecewiseSEM". To test robustness, SEM was also rerun using FDR-corrected correlation matrices. All analyses were conducted using R version 4.4.1 (R Core Team, 2022).
