Data from: Abundant top predators increase species interaction network complexity in Northeastern Chinese forests
Data files
Mar 03, 2025 version files 249.72 KB
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CauNetPros.xlsx
34.30 KB
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ran_net_attr_16.csv
69.60 KB
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ran_net_attr_17.csv
69.60 KB
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ran_net_attr_18.csv
69.60 KB
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README.md
6.61 KB
Abstract
https://doi.org/10.5061/dryad.kd51c5bhq
Description of the data and file structure
This dataset contains the input data which was used to explore ecological interactions and network parameters, model fitting code and the random interaction networks with 16-18 species.
The dataset and model fitting code are available on Zotero.
Files and variables
File: ran_net_attr_18.csv
Description: No unit (network attribute value)
Variables
- Network_ID: A unique identifier for each network.
- connectance: The connectance of the network, representing the fraction of possible connections that are actually realized.
- nestness: A measure of how nested the network is, indicating the degree to which species with fewer interactions are connected to those with more interactions.
- modularity: A measure of the modularity of the network, indicating how well the network can be divided into separate modules or communities
- average.degree: The average number of connections per node (species) in the network.
- centralization.betweenness: Measures how many “key species” exist in the network, where “key” is defined as species having a disproportionate number of interactions within a network (Vasas & Jordán, 2006). A higher value indicates a greater concentration of critical intermediary species that significantly influence network connectivity.
- centralization.degree: The centralization of the network based on betweenness centrality, which measures the degree to which a species serves as a bridge in the network.
File: ran_net_attr_17.csv
Description: No unit (network attribute value)
Variables
- Network_ID: A unique identifier for each network.
- connectance: The connectance of the network, representing the fraction of possible connections that are actually realized.
- nestness: A measure of how nested the network is, indicating the degree to which species with fewer interactions are connected to those with more interactions.
- modularity: A measure of the modularity of the network, indicating how well the network can be divided into separate modules or communities
- average.degree: The average number of connections per node (species) in the network.
- centralization.betweenness: Measures how many “key species” exist in the network, where “key” is defined as species having a disproportionate number of interactions within a network (Vasas & Jordán, 2006). A higher value indicates a greater concentration of critical intermediary species that significantly influence network connectivity.
- centralization.degree: The centralization of the network based on betweenness centrality, which measures the degree to which a species serves as a bridge in the network.
File: ran_net_attr_16.csv
Description: No unit (network attribute value)
Variables
- Network_ID: A unique identifier for each network.
- connectance: The connectance of the network, representing the fraction of possible connections that are actually realized.
- nestness: A measure of how nested the network is, indicating the degree to which species with fewer interactions are connected to those with more interactions.
- modularity: A measure of the modularity of the network, indicating how well the network can be divided into separate modules or communities
- average.degree: The average number of connections per node (species) in the network.
- centralization.betweenness: Measures how many “key species” exist in the network, where “key” is defined as species having a disproportionate number of interactions within a network (Vasas & Jordán, 2006). A higher value indicates a greater concentration of critical intermediary species that significantly influence network connectivity.
- centralization.degree: The centralization of the network based on betweenness centrality, which measures the degree to which a species serves as a bridge in the network.
File: CauNetPros.xlsx
"Species" Sheet
Variables
- area: Name of the area where the species data was collected.
- num: An identification number for the species record.
- species: The common name of the species.
- degree: The degree value of the species in the ecological network.
- degree_prop: Proportional degree of the species.
- Pedestrian - Livestock: If this species was impacted by pedestrian, vehicle or livestock.
- density: The estemated population density of the species.
- body_mass_g - foraging_stratum: Species traits.
- ForestType: The forest type ( top predator abundant forests, TAF, or top predator less abundant forests, TLF)
"Community" Sheet
- area: Name of the area where the species data was collected.
- num.edges: The number of edges in the ecological network.
- num.vertices: The number of vertices in the ecological network.
- connectance - centralization.degree: The attibutes of networks. No unit (network attribute value).
- ForestType: The forest type ( top predator abundant forests, TAF, or top predator less abundant forests, TLF).
- NPP: Annual mean net primary production.
- Pre: Annual mean precipitation.
- Tem: Annual mean temperature.
- SSMBA: The size of the spatial monitoring buffer area allocated for camera trap arrays within each study site.
- Tiger - Rat: The estemated population density of the species.
- Pedestrian - Livestock: The unit number of occurrences of pedestrian, vehicle or livestock.
Variable Units:
- all network attribute: No unit.
- density: kg/km²
- body_mass_g: g
- longevity_y: year
- gestation_length_d: day
- litter_size_n: n
- litters_per_year_n: n/year
- generation_length_d: day
- dispersal_km: km
- home_range_km2: km²
- diet_breadth_n: n
- Tiger - Rat in "Community" Sheet: density; kg/km²
- NPP: kgC/m²/year
- Pre: mm
- Tem: ℃
- SSMBA: km²
File: CauNetPros.xlsx
This Rscript_sequ.R script performs several data analysis and visualization tasks,including Data Loading and Cleaning, Linear Mixed Effects Models (LMM, Regression Diagnostics, Shapiro-Wilk Normality Test, Linear Regression, Permutational Test, Randomized Network Analysis, Result Export
Access information
Other publicly accessible locations of the data:
