Data and code from: Effects of temperature and browning on the functional response of a freshwater top predator
Data files
Feb 26, 2026 version files 2.28 MB
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Analysis.R
31.17 KB
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body_temps.csv
2.22 MB
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data_experiment1.csv
18.40 KB
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data_experiment2.csv
2.61 KB
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pike_wt.csv
587 B
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README.md
3.19 KB
Abstract
This dataset contains data and code underlying a study of how temperature and water browning affect feeding rates and functional responses of a freshwater top predator, the northern pike (Esox lucius). The archive includes data from two controlled laboratory experiments quantifying pike feeding on roach across gradients of temperature, prey density, and water colour (browning), as well as year-round body temperature records from free-ranging adult pike equipped with implanted biosensors. Experiment 1 provides replicated functional-response data across three temperatures (5, 9, and 13 °C) and two visual conditions (clear and brown water) at four prey densities. Experiment 2 quantifies feeding rates at two prey densities across a browning gradient ranging from completely clear to extremely brown water. Additional files include predator body mass measurements and continuous body-temperature time series used to validate climatic simulations of winter thermal regimes. All raw data, processed variables, and fully reproducible R code used for statistical analyses, functional-response fitting, model comparison, and figure generation are included.
Description of the data and file structure
Files and variables
File: data_experiment1.csv
Description: Dataset from Experiment 1: Functional responses at three temperatures and two browning levels.
Variables
- Orig.order: ID used to identify individual records
- Temp: water temperature (in degrees Celsius) for the three temperature treatments
- Watercolor: visual conditions, either Clear (Absorbance at 420nm = 0.02) or Brown (Absorbance at 420nm = 0.097) water
- Nprey: the number of roach added at the beginning of each 24h trial
- Rep: Replicate number (1-8)
- Pit: individual Pit tag ID for each individual pike (predator)
- Time.introd: Day and time when the tr pike was introduced to the arena
- Time.started: Day and time when the trial ended
- Time.ended: Day and time when the trial ended
- Day.all: the time (in Days since the experiment started), used as a proxy for habituation
- Day.ind: the number of days since the first time an individual pike was used in a foraging essay
- Trial.N: the sequential number of trials an individual has experienced at the start of a new trial
- Dec.h: duration (in decimal hours) of each trial
- Nsurv: the number of prey remaining at the end of each trial
- Eaten: the number of prey eaten during the trial
- Outlier: identifies three individuals that were excluded from the analysis, as the data indicate that they had not started eating in the laboratory during the trial
File: data_experiment2.csv
Description: Data from experiment 2: Feeding rates at two prey densities and five browning levels.
Variables
- Date_started: the day when the foraging trial was initiated
- Day: the time in days since the experiment started
- Temp: the water temperature (in degrees Celsius)
- Watercolor: visual conditions, ranging from entire clear to extremely brown. The measured absorbance levels were 0.02±0.01, 0.08±0.02, 0.24±0.04, 0.84±0.10 and 3.06±0.22 (mean Abs420/5 +-1SD)
- N_prey: the number of roach added at the beginning of each 24h trial
- Rep: replicate number (1-8)
- Pit_tag: the individual Pit tag ID for each individual pike
- N_survived: the number of prey remaining at the end of each trial
- Eaten: the number of prey eaten during the trial
File: body_temps.csv
Description: Field body temperatures of free-ranging adult pike collected using implanted biosensors.
Variables
- date: date and time of temperature recording
- temp: temp recorded in degrees Celsius
- ind: pit tag ID of individual pike
File: pike_wt.csv
Description:
Variables
- pit: the individual Pit tag ID for each individual pike
- wt: wet weight in grams
- date: date when weight measurements were taken
Code/software
Analysis.R contains R code for performing all analyses in the MS.
Analyses were performed in R 4.4.1
Packages used were:
dplyr
lme4
frair
nlstools
sjPlot
car
merTools
RColorBrewer
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
Experiment 1:
We quantified functional responses of pike foraging on roach at three temperatures (5°C, 9°C, and 13°C) and two levels of visual condition (clear and brown water). We performed the foraging trials in the laboratory at four prey densities (2, 5, 10, or 20 roach per 700L). Foraging trials were performed in six tanks with an interior dimension of 121cm x 104 cm (length x width) filled to 56cm with filtered and aerated water (total water volume: 704L). Visual conditions were manipulated by adding 3.5g humic acid (Humintech GmbH, Germany) to three tanks. The clear water treatment had an absorbance (Abs420/5) of 0.020±0.007, and the brown water treatment 0.097±0.012. Each of the 24 treatment combinations was replicated eight times. The trials lasted 23.5h with a 15-minute acclimation period. Pike were starved for 4 days at 9°C between trials to standardize hunger levels and motivation. A total of 24 pike were used (mean wet weight 51.8±12.8g (mean ±1SD), n=23, range: 34.5g – 79.2g). Pike were used for up to 10 foraging trials (average=8). Roach were used as prey (wet weight = 0.91±0.34g (mean ±1SD), n=47).
Experiment 2:
We performed foraging trials at two prey densities (5 and 10 roach) and five visual levels. As before, visual conditions were modified by adding humic acid. The absorbance in the browning treatments was 0.02±0.01, 0.08±0.02, 0.24±0.04, 0.84±0.10 and 3.06±0.22 (mean Abs420/5 ± 1 SD; 7 weekly measurements per treatment). The temperature was kept constant at 9°C. Pike were fasted for 12 days between Experiment 1 and 2. Foraging trials were performed exactly as in Experiment 1.
Body temperature:
We equipped six adult pike with biosensors and recorded their body temperature for 12 months in experimental ponds. Pike were captured by electrofishing and transported to three experimental ponds (70m x 30m, depth 1.5m) where they were placed in keep nets (3 x 3 x 1.5 m, 1.5 cm mesh size; Pokorný Sítě, Brloh, Czech republic) for acclimation. Pike were surgically implanted with Centi-HRT biosensors (Star-Oddi, Garðabær, Iceland) set to record body temperatures at 30 minute intervals and released into the ponds on November 23, 2021. In early October 2022, all pike were recaptured by electrofishing, biosensors retrieved, and body temperature data downloaded.
All experiments were conducted under permission from the Malmö/Lund authority for ethics of animal experimentation (Licence 5.8.18-00783/2022).
