Data from: Climate-linked biogeography of mycorrhizal fungal spore traits
Data files
Jul 02, 2025 version files 5.78 MB
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df_metadata.biogeography.traits.csv
5.78 MB
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README.md
3.08 KB
Abstract
Climate-driven variation in traits is crucial for predicting ecological responses to environmental change, yet global patterns and drivers of microbial trait variation remain poorly understood. Using global datasets of arbuscular mycorrhizal (AM) fungal observations linked to spore morphological traits, we show that climate shapes spore trait variation and functional diversity. Larger spore volumes were more prevalent in warm, wet climates but were associated with smaller species range sizes, suggesting a trade-off between persistence and dispersal potential. Similarly, ornamented spores were more common in warm, wet climates and were associated with narrower range sizes. Cell wall investment (i.e., wall thickness relative to volume) decreased in warmer, wetter climates compared to cooler, drier ones, and was the strongest predictor of species range size, with intermediate investment associated with larger geographic distributions. Spore shape and color (i.e., melanin pigmentation) also exhibited climate-driven patterns, with spherical spores and greater pigmentation more common in warm, wet climates. Phylogenetic analyses revealed high conservatism for spore ornamentation, moderate for volume, low for color, and none for shape and cell wall investment. Additionally, functional diversity analyses showed that warm, wet climates promote higher within-community trait richness but lower trait divergence, while broader climatic variability drives higher beta diversity. These findings support growing evidence that trait-environment relationships extend to microbial communities, reflecting ecological principles such as filtering, evolutionary constraint, and dispersal-persistence trade-offs. Incorporating microbial traits improves predictions of biogeographic shifts and their cascading effects on plant-microbe interactions and ecosystem stability under climate change.
Dataset DOI: 10.5061/dryad.m0cfxppgh
Description of the data and file structure
This dataset includes harmonized data from publicly available arbuscular mycorrhizal (AM) fungal spore traits from TraitAM, AM fungal presence-absence data, along with estimated abundance from GlobalAMFungi, and additional presence-absence records from Stürmer et al. (2018). All missing data represented as NA.
Files and variables
File: df_metadata.biogeography.traits.csv
Description:
Variables
- Good. names: Standardized taxonomic names of arbuscular mycorrhizal (AM) fungal species
- Longitude_Decimal: Geographic longitude (in decimal degrees) of the site.
- Latitude_Decimal: Geographic latitude (in decimal degrees) of the site.
- id: Unique identifier achieved through the paper reference-latitude-longitude combination, called 'site' for the paper
- year_of_sampling: The year the sample was collected (if available)
- plants_dominant: Dominant plant species of the site (if available)
- sequencing_platform: Platform used for DNA sequencing (454Roche, Illumina, or IonTorrent)
- sample_type: Type of sample collected (Field, Molecular_data, Trap_culture or sediment)
- primers: Primer pairs used for amplifying fungal DNA regions
- marker: Genetic marker used to identify AM fungi (SSU, LSU, or ITS)
- marker_size: Length (in base pairs) of the amplified marker region
- MAT: Mean annual temperature at the sampling site (°C)
- MAP: Mean annual precipitation at the sampling site (mm)
- abundances: Estimated abundance of AM fungal species in the sample
- Host: Host plant species associated with the AM fungi
- Climatic.Zone: Broad climatic zone (Tropical, Temperate, Boreal, Boreal/Austral, or Tundra ) of the sampling location
- INVAM: Records from the INVAM (International Culture Collection of (Vesicular) Arbuscular Mycorrhizal Fungi) database or not (1 is yes and 0 is no)
- Biome: Biome classification (Forest, Grassland, Desert, Tundra, Cropland, Shrubland, Anthropogenic, Aquatic, or Wetland)
- Soil.pH: Soil pH measured at the sampling site
- vol_mean: Mean spore volume of AM fungal spore (µm³)
- shape_median: Median shape of AM fungal spore
- color_most: Mean melanin content of AM fungal spore
- investment_mean: Mean cell wall investment of AM fungal spore relative to volume
- orn_height_mean: Mean ornamentation height of AM fungal spore
Access information
Data was derived from the following sources:
- V. B. Chaudhary, et al., TraitAM, a global spore trait database for arbuscular mycorrhizal fungi. Sci Data 12, 588 (2025).
- Geoffrey Zahn, gzahn/GlobalAMF_Database: Initial release. (2025). https://doi.org/10.5281/ZENODO.14812876. Deposited 5 February 2025.
- S. L. Stürmer, J. D. Bever, J. B. Morton, Biogeography of arbuscular mycorrhizal fungi (Glomeromycota): a phylogenetic perspective on species distribution patterns. Mycorrhiza 28, 587–603 (2018).
