Data and code from: Aphid honeydew reduces soil nitrogen and increases host plant growth
Data files
Jul 15, 2026 version files 14.37 KB
-
honeydew_analysis_2026-05-13.zip
11.68 KB
-
README.md
2.69 KB
Abstract
Plants affect their soils in ways that can have positive or negative effects on themselves and other plants. We report the results of an experiment that investigated how a plant-herbivore interaction affected later seedling growth via changes to the soil. Many sap-feeding insect herbivores produce and expel a copious, post-digestion solution of excess photosynthate sugars called honeydew. Previous ecosystem-level studies suggest that this carbon-rich input of labile dissolved organic matter commonly drives nitrogen immobilization (and reduces nitrogen availability) as it is transported into the soil. Here, we ask if seasonal pulses of accumulated aphid (Aphis nerii) honeydew reduce the availability of soil nitrogen below milkweed (Asclepias fascicularis) host plants, and how honeydew-conditioned soil affects the subsequent growth of multiple seedling species. We find that the addition of honeydew at accumulated levels reduced total inorganic soil nitrogen by 48.8 % relative to controls. Unexpectedly, milkweed seedlings grew 4.2 times larger by mass and 90 % taller than those in the control group. We did not observe any honeydew effects on the growth of two potentially competing species (cheatgrass, Bromus tectorum, and yellow star-thistle, Centaurea solstitialis). These results suggest the possibility of a positive plant-soil feedback for milkweeds, mediated by aphid honeydew.
Dataset DOI: 10.5061/dryad.mcvdnckcz
Description of the data and file structure
These data from an experiment that investigated how a plant-herbivore interaction affected later seedling growth via changes to the soil. We ask if seasonal pulses of accumulated aphid (Aphis nerii) honeydew reduce the availability of soil nitrogen below milkweed (Asclepias fascicularis) host plants, and how honeydew-conditioned soil affects the subsequent growth of multiple seedling species.
Files and variables
File: honeydew_analysis_2026-05-13.zip
Description of the folder structure
Compressed folder including a plant data folder, a soil data folder and an analysis script in Rmarkdown.
Description of the data files
"plant data/plant treatment data.csv": bioassay plant identification data
- orig.id: id number of original 48 milkweed plants
- trt: honeydew treatment label, 0x =0 %, 1x = 50 %, 2x = 100 %
- block: greenhouse bench
- bioassay.sp: bioassay plant species
- bioassay.code: shortened bioassay plant species code
- label: bioassay replicate label combining orig.id, trt and bioassay code
- seeded.date: bioassay seeding date; replicates that failed to germinate from 4/7/23 planting were reseeded on 4/18/23
- mass.g: final bioassay plant dry shoot mass
"plant data/plant growth data.csv": repeated measures of bioassay plants
- label: bioassay replicate label combining orig.id, trt and bioassay code
- date: observation date (mm/dd/yyyy)
- ht.cm: max plant length in cm
"soil data/soil treatment data.csv": randomized treatment assignments
- id: id number of original 48 milkweed plants
- trt: honeydew treatment label, 0x = 0 %, 1x = 50 %, 2x = 100 %
- block: greenhouse bench
"soil data/soil N data.csv": ammonium and nitrate concentrations measured from collected soil samples
- id: id number of original 48 milkweed plants
- NH4: ammonium-N concentration in ppm
- NO3: nitrate-N concentration in ppm
"honeydew analysis 2026-05-13.Rmd": analysis script in Rmarkdown, imports data, data exploration, modeling and figure generation. Uses the following packages:
- tidyverse: for data manipulation and plotting
- effectsize: for the eta_squared() function for effect size metric
- MuMIn: for AICc()
- patchwork: for multipanel plotting
Code/software
All analyses were conducted in R version 4.5.0.
R Core Team. 2025. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
