Data from: Root biomass distribution in response to increasing active layer thickness across plant communities in a permafrost peatland
Data files
Sep 10, 2026 version files 208.77 KB
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R_Script_Root_biomass_distribution.R
25.39 KB
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README.md
8.82 KB
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root_soil_longformat.csv
76.65 KB
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rootsoil.csv
50.43 KB
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soil15N.csv
23.24 KB
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stabiso.csv
24.24 KB
Abstract
Dataset DOI: 10.5061/dryad.mw6m906cr
Description of the data and file structure
Study site:
Ombrotrophic peatland underlain by permafrost located near Abisko, Northern Sweden
low Arctic with a mean annual air temperature of 0.5 °C (1991-2020) and a mean annual precipitation of 348 mm (1991-2020) (Swedish Meteorological and Hydrological Institute, SMHI)
The vegetation is dominated by the peatmoss Sphagnum fuscum (Schimp.) H. Klingg. and the vascular vegetation consists of dwarf-shrub dominated patches including the species Empetrum nigrum spp. hermaphroditum ((Hagerup) Böcher), Betula nana (L.), Andromeda polifolia (L.), and Vaccinium uliginosum (L.). Additionally, there are patches dominated by the graminoid Eriophorum vaginatum (L.) with the aforementioned dwarf-shrub species occasionally proliferating into those patches.
Files and variables
Metadata:
- rootsoil: Root mass for every root type, soil properties (C,N)
- root_soil_longformat: Root mass in longformat, soil properties (C,N)
- stabiso: Delta 15N for leaves of six plant species
- Soil15N: Delta 15N for soil cores, corresponding to root samples
In all datasets missing values are listed as NA/na
File: root_soil_longformat.csv
Description: This is a longformat dataset for root biomass, listing root biomass for shrubs and Eriophorum in one column
Variables
- plot_ID: Plot ID with depth increment = sample ID
- Plot: Plot ID
- Depth: Depth increment in the soil profile
- erivag: Plant community type (1 = Eriophorum, 0 = dwarf-shrub dominated)
- AL_type: Active Layer type (Factors: shallow = up to 60cm, deep = more than 60cm depth)
- AL_depth: Active Layer depth in the plot (in cm)
- treatment: Treatment with 2 factors Active Layer depth and Plant community (DeEr, DeWo, ShEr, ShWo; DeEr Deep active layer with Eriophorum dominated vegetation, DeWo Deep active layer with dwarf-shrub dominated vegetation, ShEr Shallow active layer with Eriophorum dominated vegetation, ShWo Shallow active layer with dwarf-shrub dominated vegetation)
- root_type: Root type for which root biomass is specified, mix = dwarf-shrubs, Evag = Eriophorum
- soil_water_cont: Soil water content (g)
- H2Opro: Percentage of water content
- root_FG: root Fresh weight (g)
- root_TG: root Dry weight (g)
- root_TG_mg: root Dry weight (mg)
- root_TG_m3: root Dry weight (m3)
- H2O_cont: Root water content
- tot_bio_TG: Total root dry weight biomass (g) (Evag and shrub roots)
- tot_bio_FG: Total root fresh weight biomass (g)
- tot_bio_TG_m3: Total root dry weight biomass (Evag and shrub roots) g per m3
- RDMS_tot: Root Dry Matter Content of total root biomass
- RDMS: Root Dry Matter Content of each root type
- C_tot_pro: Total Carbon (%)
- Ntot_pro: Total Nitrogen (%)
- Ctot_mg_gTB: Total Carbon (mg/gTB)
- Ntot_mg_gTB: Total Nitrogen (mg/gTB)
- Ctot_mmol: Total Carbon (mmol/gTB)
- Ntot_mmol: Total Nitrogen (mmol/gTB)
- Corg_mmol: Organic Carbon (mmol/gTB)
- Corg_mg: Organic Carbon (mg/gTB)
- CN_mol: C/N ratio (mol/mol)
- CN_g: C/N ratio (g/g)
- rootTG_m3: root Dry weight (m3)
File: rootsoil.csv
Description: This dataset covers the amount of root biomass in depth increments
Variables
- plot_ID: Plot ID with depth increment
- Plot: Plot ID
- Depth: Depth increment in the soil profile
- erivag: Plant community type (1 = Eriophorum, 0 = dwarf-shrub dominated)
- AL_type: Active Layer type (Factors: shallow = up to 60cm, deep = more than 60cm depth)
- AL_depth: Active Layer depth in the plot (in cm)
- treatment: Treatment with 2 factors Active Layer depth and Plant community (DeEr, DeWo, ShEr, ShWo; DeEr Deep active layer with Eriophorum dominated vegetation, DeWo Deep active layer with dwarf-shrub dominated vegetation, ShEr Shallow active layer with Eriophorum dominated vegetation, ShWo Shallow active layer with dwarf-shrub dominated vegetation)
- root_type: Root type for which root biomass is specified, mix = dwarf-shrubs, Evag = Eriophorum
- soil_water_cont: Soil water content (g)
- H2Opro: dwarf-shrub root Fresh weight (g)
- shrubFG: dwarf-shrub root Dry weight (g)
- shrubTG: dwarf-shrub Root water content
- shrubTG_mg: dwarf-shrub root Dry weight (mg)
- eriFG: Eriophorum root Fresh weight (g)
- eriTG: Eriophorum root Dry weight (g)
- eriTGmg: Eriophorum root Dry weight (mg)
- eriTGL: Eriophorum root Dry weight (g per Liter)
- eriTGm3: Eriophorum root Dry weight (g per cubic meter)
- shrub_TG_L: dwarf-shrub root Dry weight (g per Liter)
- shrub_TG_m3: dwarf-shrub root Dry weight (g per cubic meter)
- tot_roots_plot: Total amount of root biomass aggregated in the plot (g)
- H2O_cont: Water content
- totrootTG: Total amount of root biomass in this sample dry weight (g)
- tot_bio_FG: Total amount of root biomass in this sample fresh weight (g)
- totrootm3: Total amount of root biomass in this sample (g per cubic meter)
- totrootL: Total amount of root biomass in this sample (g per Liter)
- tot_bio_TG_L_plot: Total amount of root biomass in this plot (g per Liter)
- RDMS_tot: Root dry matter content from all roots in this sample
- RDMSshrub: Root dry matter content in dwarf-shrub roots
- RDMCeri: Root dry matter content in Eriophorum roots
- C_tot_pro: Total Carbon (%)
- Ntot_pro: Total Nitrogen (%)
- Ctot_mg_gTB: Total Carbon (mg/gTB)
- Ntot_mg_gTB: Total Nitrogen (mg/gTB)
- Ctot_mmol: Total Carbon (mmol/gTB)
- Ntot_mmol: Total Nitrogen (mmol/gTB)
- Corg_mmol: Organic Carbon (mmol/gTB)
- Corg_mg: Organic Carbon (mg/gTB)
- CN_mol: C/N ratio (mol/mol)
- CN_g: C/N ratio (g/g)
- rootTG_m3: root dry weight per cubic meter
File: soil15N.csv
Description: This dataset covers the foliar 15N values
Variables
- ProbeNr: Number that the sample was given
- plot_ID: ID of the plot
- Plot: Plot
- Depth: Depth increment (in cm)
- erivag: Plant community type (1 = Eriophorum, 0 = dwarf-shrub dominated)
- AL_type: Active Layer type (Factors: shallow = up to 60cm, deep = more than 60cm depth)
- AL_depth: Active Layer depth in the plot (in cm)
- treatment: Treatment with 2 factors Active Layer depth and Plant community (DeEr, DeWo, ShEr, ShWo; DeEr Deep active layer with Eriophorum dominated vegetation, DeWo Deep active layer with dwarf-shrub dominated vegetation, ShEr Shallow active layer with Eriophorum dominated vegetation, ShWo Shallow active layer with dwarf-shrub dominated vegetation)
- Einwaage: Amount of soil that was weighed in (mg)
- deltasoil : δ15N in the soil
- ATOM_prozent: ATOM % 15N
- N amount: µg
- N concentration: %
- delta 13C: δ13C in the soil
- C_ATOM_prozent: ATOM % 13C
- C_amount: µg
- C_concentration: %
File: stabiso.csv
Description: This dataset covers the foliar 15N values
Variables
- Probe: Sample number
- ID: Sample ID
- species: Plant species that the leaf originated from
- Plot: Plot number
- erivag: Plant community type (1 = Eriophorum, 0 = dwarf-shrub dominated)
- AL_type: Active Layer type (Factors: shallow = up to 60cm, deep = more than 60cm depth)
- AL_depth: Active Layer depth in the plot (in cm)
- treatment: Treatment with 2 factors Active Layer depth and Plant community (DeEr, DeWo, ShEr, ShWo; DeEr Deep active layer with Eriophorum dominated vegetation, DeWo Deep active layer with dwarf-shrub dominated vegetation, ShEr Shallow active layer with Eriophorum dominated vegetation, ShWo Shallow active layer with dwarf-shrub dominated vegetation)
- einwaage: Amount of soil that was weighed (in mg)
- delta_luft: δ15N DELTA Luft ‰
- atom_15n: ATOM % 15N
- n_cont: N-Amount µg MS MS
- n_cont_pro: N-Content % MS MS
- n_cont_WLD: N-Amount µg WLD WLD
- n_cont_pro_WLD: N-Content % WLD WLD
- N_MSWLD: MS/WLD N
- delta_c1312: δ13C 13/12 V-PDB ‰ ‰
- atom_13c: ATOM % 13C
- c_cont: C-amount µg MS MS
- c_cont_pro: C-Content % MS MS
- c_cont_WLD: C-Amount µg WLD WLD
- c_cont_pro_WLD: C-Content % WLD WLD
- C_MSWLD: MS/WLD C
Abbreviations:
MS lists amount detected from mass spectrometer
WLD lists amount detected from thermal conductivity detector within the elemental analyzer
V-PDB is the Vienna Pee Dee Belmnite Standard used for measurments of 13C
File: R_Script_Root_biomass_distribution.R
Description: script for analysis of the associated data.
Code/software
R Version 4.5.2
packages:
library(tidyverse)
library(lme4)
library(DHARMa)
library(ggthemes)
library(emmeans)
library(Rmisc)
library(lmerTest)
library(ggplot2)
library(sjPlot) # for overview of model output
library(car)
Experimental design
Sampling was conducted in plots in a fully crossed 2‑factorial design, with either shallow or deep active layer thickness y Information) and being dominated by the graminoid E. vaginatum or by dwarf-shrub species. The total number of plots was 24, with six replicates in each treatment combination.
Sampling took place from mid to late September 2021, at the time of maximum thawing depth of the active layer.
