Small skeletons show size-specific scaling: an exploration of allometry in the mammalian lumbar spine
Data files
Mar 29, 2024 version files 8.72 MB
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Batomys_tb_and_spacing_VOIs.zip
1.85 MB
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Carpomys_tb_and_spacing_VOIs.zip
604.07 KB
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Crateromys_tb_and_spacing_VOIs.zip
1.38 MB
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Musseromys_tb_and_spacing_VOIs.zip
2.66 MB
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Phloeomys_tb_and_spacing_VOIs.zip
2.19 MB
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README.md
25.88 KB
Abstract
Studies of vertebrate bone biomechanics often focus on skeletal adaptations at upper extremes of body mass, ignoring the importance of skeletal adaptations at lower extremes. Yet mammals are ancestrally small and most modern species have masses under 5 kg, so the evolution of morphology and function at small size should be prioritized for understanding how mammals make a living. We examined allometric scaling of lumbar vertebrae in the small-bodied Philippine endemic rodents known as cloud rats, which vary in mass across two orders of magnitude (15.5g-2700g). External vertebral dimensions scale with isometry or positive allometry, likely relating to body size and nuances in quadrupedal posture. In contrast to most mammalian trabecular bone studies, bone volume fraction and trabecular thickness scale with positive allometry and isometry, respectively. It is physiologically impossible for these trends to continue to the upper extremes of mammalian body size, and we demonstrate a fundamental difference in trabecular bone allometry between large- and small-bodied mammals. These findings have important implications for the biomechanical capabilities of mammalian bone at small body size, for the selective pressures that govern skeletal evolution in small mammals, and for the way we define “small” and “large” in the context of vertebrate skeletons.
Dataset Attribution and Usage
The authors respectfully request to be contacted by researchers interested in the re-use of these data so that the possibility of collaboration can be discussed. Stephanie M. Smith: smsmith@fieldmuseum.org
- Contributor ORCID IDs:
- Stephanie M. Smith: https://orcid.org/0000-0002-7480-3581
- Lawrence R. Heaney: https://orcid.org/0000-0003-3334-4400
- Kenneth D. Angielczyk: https://orcid.org/0000-0001-7147-2054
Suggested Citations:
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Dataset citation: Smith, S.M., Heaney, L. R., Angielczyk, K. D. 2023. Data for the article "Small skeletons show size-specific scaling: an exploration of allometry in the mammalian lumbar spine", Dryad, Dataset, https://doi.org/10.5061/dryad.2bvq83btg
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Corresponding publication: Smith, S.M., Heaney, L. R., Angielczyk, K. D. Small skeletons show size-specific scaling: an exploration of allometry in the mammalian lumbar spine. Proceedings of the Royal Society B. In review.
Data and File Overview
Summary Metrics
- File count: 5
- Total file size: 22.0 MB
- Range of individual file sizes: 1.78 MB - 6.43 MB
- File formats: .zip, with individual images within the file structure saved as 8-bit .tiffs. See the data structure below for details.
Table of Contents
- Batomys_tb_and_spacing_VOIs.zip
- Carpomys_tb_and_spacing_VOIs.zip
- Crateromys_tb_and_spacing_VOIs.zip
- Musseromys_tb_and_spacing_VOIs.zip
- Phloeomys_tb_and_spacing_VOIs.zip
Setup
- Recommended software/tools: ImageJ v.1.53t, BoneJ2 v.7.0.11
Data structure
Each .zip file contains subfolders for each specimen of a single genus included in our analyses. Each specimen folder has two subfolders which contain two different versions of segmented vertebral trabecular bone images from the third lumbar vertebra of that specimen. Each version of the segmented data has a folder: trabecular bone segmentations are in folders ending in _tball and non-bone/background segmentations are in folders ending in _forspacing. For specific uses of these two versions of the data, see the associated manuscript, particularly Methods, Figure 2, and Supplemental Methods. All images are 8-bit .tiff. The structure of nested folders is shown below.
Batomys_tb_and_spacing_VOIs.zip
Batomys granti
|-- FMNH_188323_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 188323, Batomys granti
| |-- FMNH_188323_Batomys_granti_VOIs # All files relevant to FMNH 188323, Batomys granti
| |-- FMNH_188323_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 188323, Batomys granti
| |-- FMNH_188323_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (226 images, .tiff) for third lumbar vertebra of FMNH 188323, Batomys granti
| |--FMNH_188323_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 188323, Batomys granti
| |-- FMNH_188323_Batomys_granti_tball_L03 # trabecular bone binary image stack (227 images, .tiff) for third lumbar vertebra of FMNH 188323, Batomys granti
|-- FMNH_193689_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193689, Batomys granti
| |-- FMNH_193689_Batomys_granti_VOIs # All files relevant to FMNH 193689, Batomys granti
| |-- FMNH_193689_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 193689, Batomys granti
| |-- FMNH_193689_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (241 images, .tiff) for third lumbar vertebra of FMNH 193689, Batomys granti
| |--FMNH_193689_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 193689, Batomys granti
| |-- FMNH_193689_Batomys_granti_tball_L03 # trabecular bone binary image stack (240 images, .tiff) for third lumbar vertebra of FMNH 193689, Batomys granti
|-- FMNH_193691_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193691, Batomys granti
| |-- FMNH_193691_Batomys_granti_VOIs # All files relevant to FMNH 193691, Batomys granti
| |-- FMNH_193691_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 193691, Batomys granti
| |-- FMNH_193691_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (232 images, .tiff) for third lumbar vertebra of FMNH 193691, Batomys granti
| |--FMNH_193691_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 193691, Batomys granti
| |-- FMNH_193691_Batomys_granti_tball_L03 # trabecular bone binary image stack (232 images, .tiff) for third lumbar vertebra of FMNH 193691, Batomys granti
|-- FMNH_193693_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193693, Batomys granti
| |-- FMNH_193693_Batomys_granti_VOIs # All files relevant to FMNH 193693, Batomys granti
| |-- FMNH_193693_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 193693, Batomys granti
| |-- FMNH_193693_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (239 images, .tiff) for third lumbar vertebra of FMNH 193693, Batomys granti
| |--FMNH_193693_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 193693, Batomys granti
| |-- FMNH_193693_Batomys_granti_tball_L03 # trabecular bone binary image stack (239 images, .tiff) for third lumbar vertebra of FMNH 193693, Batomys granti
|-- FMNH_193695_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193695, Batomys granti
| |-- FMNH_193695_Batomys_granti_VOIs # All files relevant to FMNH 193695, Batomys granti
| |-- FMNH_193695_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 193695, Batomys granti
| |-- FMNH_193695_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (247 images, .tiff) for third lumbar vertebra of FMNH 193695, Batomys granti
| |--FMNH_193695_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 193695, Batomys granti
| |-- FMNH_193695_Batomys_granti_tball_L03 # trabecular bone binary image stack (247 images, .tiff) for third lumbar vertebra of FMNH 193695, Batomys granti
|-- FMNH_193697_Batomys_granti_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193697, Batomys granti
| |-- FMNH_193697_Batomys_granti_VOIs # All files relevant to FMNH 193697, Batomys granti
| |-- FMNH_193697_Batomys_granti_forspacing # non-bone/background binary image segmentation folders for FMNH 193697, Batomys granti
| |-- FMNH_193697_Batomys_granti_forspacing_L03 # non-bone/background binary image stack (238 images, .tiff) for third lumbar vertebra of FMNH 193697, Batomys granti
| |--FMNH_193697_Batomys_granti_tball # trabecular bone binary image segmentation folders for FMNH 193697, Batomys granti
| |-- FMNH_193697_Batomys_granti_tball_L03 # trabecular bone binary image stack (238 images, .tiff) for third lumbar vertebra of FMNH 193697, Batomys granti
Carpomys_tb_and_spacing_VOIs.zip
Carpomys melanurus
|-- FMNH_198723_Carpomys_melanurus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 198723, Carpomys melanurus
| |-- FMNH_198723_Carpomys_melanurus_VOIs # All files relevant to FMNH 198723, Carpomys melanurus
| |-- FMNH_198723_Carpomys_melanurus_forspacing # non-bone/background binary image segmentation folders for FMNH 198723, Carpomys melanurus
| |-- FMNH_198723_Carpomys_melanurus_forspacing_L03 # non-bone/background binary image stack (209 images, .tiff) for third lumbar vertebra of FMNH 198723, Carpomys melanurus
| |--FMNH_198723_Carpomys_melanurus_tball # trabecular bone binary image segmentation folders for FMNH 198723, Carpomys melanurus
| |-- FMNH_198723_Carpomys_melanurus_tball_L03 # trabecular bone binary image stack (209 images, .tiff) for third lumbar vertebra of FMNH 198723, Carpomys melanurus
Carpomys phaeurus
|-- FMNH_175565_Carpomys_phaeurus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 175565, Carpomys phaeurus
| |-- FMNH_175565_Carpomys_phaeurus_VOIs # All files relevant to FMNH 175565, Carpomys phaeurus
| |-- FMNH_175565_Carpomys_phaeurus_forspacing # non-bone/background binary image segmentation folders for FMNH 175565, Carpomys phaeurus
| |-- FMNH_175565_Carpomys_phaeurus_forspacing_L03 # non-bone/background binary image stack (222 images, .tiff) for third lumbar vertebra of FMNH 175565, Carpomys phaeurus
| |--FMNH_175565_Carpomys_phaeurus_tball # trabecular bone binary image segmentation folders for FMNH 175565, Carpomys phaeurus
| |-- FMNH_175565_Carpomys_phaeurus_tball_L03 # trabecular bone binary image stack (222 images, .tiff) for third lumbar vertebra of FMNH 175565, Carpomys phaeurus
Crateromys_tb_and_spacing_VOIs.zip
Crateromys schadenbergi
|-- FMNH_62293_Crateromys_schadenbergi_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 62293, Crateromys schadenbergi
| |-- FMNH_62293_Crateromys_schadenbergi_VOIs # All files relevant to FMNH 62293, Crateromys schadenbergi
| |-- FMNH_62293_Crateromys_schadenbergi_forspacing # non-bone/background binary image segmentation folders for FMNH 62293, Crateromys schadenbergi
| |-- FMNH_62293_Crateromys_schadenbergi_forspacing_L03 # non-bone/background binary image stack (246 images, .tiff) for third lumbar vertebra of FMNH 62293, Crateromys schadenbergi
| |--FMNH_62293_Crateromys_schadenbergi_tball # trabecular bone binary image segmentation folders for FMNH 62293, Crateromys schadenbergi
| |-- FMNH_62293_Crateromys_schadenbergi_tball_L03 # trabecular bone binary image stack (246 images, .tiff) for third lumbar vertebra of FMNH 62293, Crateromys schadenbergi
|-- FMNH_62294_Crateromys_schadenbergi_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 62294, Crateromys schadenbergi
| |-- FMNH_62294_Crateromys_schadenbergi_VOIs # All files relevant to FMNH 62294, Crateromys schadenbergi
| |-- FMNH_62294_Crateromys_schadenbergi_forspacing # non-bone/background binary image segmentation folders for FMNH 62294, Crateromys schadenbergi
| |-- FMNH_62294_Crateromys_schadenbergi_forspacing_L03 # non-bone/background binary image stack (242 images, .tiff) for third lumbar vertebra of FMNH 62294, Crateromys schadenbergi
| |--FMNH_62294_Crateromys_schadenbergi_tball # trabecular bone binary image segmentation folders for FMNH 62294, Crateromys schadenbergi
| |-- FMNH_62294_Crateromys_schadenbergi_tball_L03 # trabecular bone binary image stack (241 images, .tiff) for third lumbar vertebra of FMNH 62294, Crateromys schadenbergi
|-- FMNH_193750_Crateromys_schadenbergi_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193750, Crateromys schadenbergi
| |-- FMNH_193750_Crateromys_schadenbergi_VOIs # All files relevant to FMNH 193750, Crateromys schadenbergi
| |-- FMNH_193750_Crateromys_schadenbergi_forspacing # non-bone/background binary image segmentation folders for FMNH 193750, Crateromys schadenbergi
| |-- FMNH_193750_Crateromys_schadenbergi_forspacing_L03 # non-bone/background binary image stack (217 images, .tiff) for third lumbar vertebra of FMNH 193750, Crateromys schadenbergi
| |--FMNH_193750_Crateromys_schadenbergi_tball # trabecular bone binary image segmentation folders for FMNH 193750, Crateromys schadenbergi
| |-- FMNH_193750_Crateromys_schadenbergi_tball_L03 # trabecular bone binary image stack (219 images, .tiff) for third lumbar vertebra of FMNH 193750, Crateromys schadenbergi
Musseromys_tb_and_spacing_VOIs.zip
Musseromys anacuao
|-- FMNH_209522_Musseromys_anacuao_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 209522, Musseromys anacuao
| |-- FMNH_209522_Musseromys_anacuao_VOIs # All files relevant to FMNH 209522, Musseromys anacuao
| |-- FMNH_209522_Musseromys_anacuao_forspacing # non-bone/background binary image segmentation folders for FMNH 209522, Musseromys anacuao
| |-- FMNH_209522_Musseromys_anacuao_forspacing_L03 # non-bone/background binary image stack (209 images, .tiff) for third lumbar vertebra of FMNH 209522, Musseromys anacuao
| |--FMNH_209522_Musseromys_anacuao_tball # trabecular bone binary image segmentation folders for FMNH 209522, Musseromys anacuao
| |-- FMNH_209522_Musseromys_anacuao_tball_L03 # trabecular bone binary image stack (209 images, .tiff) for third lumbar vertebra of FMNH 209522, Musseromys anacuao
|-- FMNH_209523_Musseromys_anacuao_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 209523, Musseromys anacuao
| |-- FMNH_209523_Musseromys_anacuao_VOIs # All files relevant to FMNH 209523, Musseromys anacuao
| |-- FMNH_209523_Musseromys_anacuao_forspacing # non-bone/background binary image segmentation folders for FMNH 209523, Musseromys anacuao
| |-- FMNH_209523_Musseromys_anacuao_forspacing_L03 # non-bone/background binary image stack (196 images, .tiff) for third lumbar vertebra of FMNH 209523, Musseromys anacuao
| |--FMNH_209523_Musseromys_anacuao_tball # trabecular bone binary image segmentation folders for FMNH 209523, Musseromys anacuao
| |-- FMNH_209523_Musseromys_anacuao_tball_L03 # trabecular bone binary image stack (195 images, .tiff) for third lumbar vertebra of FMNH 209523, Musseromys anacuao
Musseromys beneficus
|-- FMNH_198713_Musseromys_beneficus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 198713, Musseromys beneficus
| |-- FMNH_198713_Musseromys_beneficus_VOIs # All files relevant to FMNH 198713, Musseromys beneficus
| |-- FMNH_198713_Musseromys_beneficus_forspacing # non-bone/background binary image segmentation folders for FMNH 198713, Musseromys beneficus
| |-- FMNH_198713_Musseromys_beneficus_forspacing_L03 # non-bone/background binary image stack (193 images, .tiff) for third lumbar vertebra of FMNH 198713, Musseromys beneficus
| |--FMNH_198713_Musseromys_beneficus_tball # trabecular bone binary image segmentation folders for FMNH 198713, Musseromys beneficus
| |-- FMNH_198713_Musseromys_beneficus_tball_L03 # trabecular bone binary image stack (195 images, .tiff) for third lumbar vertebra of FMNH 198713, Musseromys beneficus
|-- FMNH_198714_Musseromys_beneficus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 198714, Musseromys beneficus
| |-- FMNH_198714_Musseromys_beneficus_VOIs # All files relevant to FMNH 198714, Musseromys beneficus
| |-- FMNH_198714_Musseromys_beneficus_forspacing # non-bone/background binary image segmentation folders for FMNH 198714, Musseromys beneficus
| |-- FMNH_198714_Musseromys_beneficus_forspacing_L03 # non-bone/background binary image stack (246 images, .tiff) for third lumbar vertebra of FMNH 198714, Musseromys beneficus
| |--FMNH_198714_Musseromys_beneficus_tball # trabecular bone binary image segmentation folders for FMNH 198714, Musseromys beneficus
| |-- FMNH_198714_Musseromys_beneficus_tball_L03 # trabecular bone binary image stack (246 images, .tiff) for third lumbar vertebra of FMNH 198714, Musseromys beneficus
Musseromys gulantang
|-- FMNH_178405_Musseromys_gulantang_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 178405, Musseromys gulantang
| |-- FMNH_178405_Musseromys_gulantang_VOIs # All files relevant to FMNH 178405, Musseromys gulantang
| |-- FMNH_178405_Musseromys_gulantang_forspacing # non-bone/background binary image segmentation folders for FMNH 178405, Musseromys gulantang
| |-- FMNH_178405_Musseromys_gulantang_forspacing_L03 # non-bone/background binary image stack (227 images, .tiff) for third lumbar vertebra of FMNH 178405, Musseromys gulantang
| |--FMNH_178405_Musseromys_gulantang_tball # trabecular bone binary image segmentation folders for FMNH 178405, Musseromys gulantang
| |-- FMNH_178405_Musseromys_gulantang_tball_L03 # trabecular bone binary image stack (224 images, .tiff) for third lumbar vertebra of FMNH 178405, Musseromys gulantang
Musseromys inopinatus
|-- FMNH_193838_Musseromys_inopinatus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193838, Musseromys inopinatus
| |-- FMNH_193838_Musseromys_inopinatus_VOIs # All files relevant to FMNH 193838, Musseromys inopinatus
| |-- FMNH_193838_Musseromys_inopinatus_forspacing # non-bone/background binary image segmentation folders for FMNH 193838, Musseromys inopinatus
| |-- FMNH_193838_Musseromys_inopinatus_forspacing_L03 # non-bone/background binary image stack (179 images, .tiff) for third lumbar vertebra of FMNH 193838, Musseromys inopinatus
| |--FMNH_193838_Musseromys_inopinatus_tball # trabecular bone binary image segmentation folders for FMNH 193838, Musseromys inopinatus
| |-- FMNH_193838_Musseromys_inopinatus_tball_L03 # trabecular bone binary image stack (178 images, .tiff) for third lumbar vertebra of FMNH 193838, Musseromys inopinatus
|-- FMNH_193839_Musseromys_inopinatus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193839, Musseromys inopinatus
| |-- FMNH_193839_Musseromys_inopinatus_VOIs # All files relevant to FMNH 193839, Musseromys inopinatus
| |-- FMNH_193839_Musseromys_inopinatus_forspacing # non-bone/background binary image segmentation folders for FMNH 193839, Musseromys inopinatus
| |-- FMNH_193839_Musseromys_inopinatus_forspacing_L03 # non-bone/background binary image stack (198 images, .tiff) for third lumbar vertebra of FMNH 193839, Musseromys inopinatus
| |--FMNH_193839_Musseromys_inopinatus_tball # trabecular bone binary image segmentation folders for FMNH 193839, Musseromys inopinatus
| |-- FMNH_193839_Musseromys_inopinatus_tball_L03 # trabecular bone binary image stack (198 images, .tiff) for third lumbar vertebra of FMNH 193839, Musseromys inopinatus
|-- FMNH_193840_Musseromys_inopinatus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 193840, Musseromys inopinatus
| |-- FMNH_193840_Musseromys_inopinatus_VOIs # All files relevant to FMNH 193840, Musseromys inopinatus
| |-- FMNH_193840_Musseromys_inopinatus_forspacing # non-bone/background binary image segmentation folders for FMNH 193840, Musseromys inopinatus
| |-- FMNH_193840_Musseromys_inopinatus_forspacing_L03 # non-bone/background binary image stack (180 images, .tiff) for third lumbar vertebra of FMNH 193840, Musseromys inopinatus
| |--FMNH_193840_Musseromys_inopinatus_tball # trabecular bone binary image segmentation folders for FMNH 193840, Musseromys inopinatus
| |-- FMNH_193840_Musseromys_inopinatus_tball_L03 # trabecular bone binary image stack (180 images, .tiff) for third lumbar vertebra of FMNH 193840, Musseromys inopinatus
|-- FMNH_214332_Musseromys_inopinatus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 214332, Musseromys inopinatus
| |-- FMNH_214332_Musseromys_inopinatus_VOIs # All files relevant to FMNH 214332, Musseromys inopinatus
| |-- FMNH_214332_Musseromys_inopinatus_forspacing # non-bone/background binary image segmentation folders for FMNH 214332, Musseromys inopinatus
| |-- FMNH_214332_Musseromys_inopinatus_forspacing_L03 # non-bone/background binary image stack (136 images, .tiff) for third lumbar vertebra of FMNH 214332, Musseromys inopinatus
| |--FMNH_214332_Musseromys_inopinatus_tball # trabecular bone binary image segmentation folders for FMNH 214332, Musseromys inopinatus
| |-- FMNH_214332_Musseromys_inopinatus_tball_L03 # trabecular bone binary image stack (137 images, .tiff) for third lumbar vertebra of FMNH 214332, Musseromys inopinatus
|-- FMNH_214333_Musseromys_inopinatus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 214333, Musseromys inopinatus
| |-- FMNH_214333_Musseromys_inopinatus_VOIs # All files relevant to FMNH 214333, Musseromys inopinatus
| |-- FMNH_214333_Musseromys_inopinatus_forspacing # non-bone/background binary image segmentation folders for FMNH 214333, Musseromys inopinatus
| |-- FMNH_214333_Musseromys_inopinatus_forspacing_L03 # non-bone/background binary image stack (186 images, .tiff) for third lumbar vertebra of FMNH 214333, Musseromys inopinatus
| |--FMNH_214333_Musseromys_inopinatus_tball # trabecular bone binary image segmentation folders for FMNH 214333, Musseromys inopinatus
| |-- FMNH_214333_Musseromys_inopinatus_tball_L03 # trabecular bone binary image stack (185 images, .tiff) for third lumbar vertebra of FMNH 214333, Musseromys inopinatus
Phloeomys_tb_and_spacing_VOIs.zip
Phloeomys cumingi
|-- FMNH_218405_Phloeomys_cumingi_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 218405, Phloeomys cumingi
| |-- FMNH_218405_Phloeomys_cumingi_VOIs # All files relevant to FMNH 218405, Phloeomys cumingi
| |-- FMNH_218405_Phloeomys_cumingi_forspacing # non-bone/background binary image segmentation folders for FMNH 218405, Phloeomys cumingi
| |-- FMNH_218405_Phloeomys_cumingi_forspacing_L03 # non-bone/background binary image stack (251 images, .tiff) for third lumbar vertebra of FMNH 218405, Phloeomys cumingi
| |--FMNH_218405_Phloeomys_cumingi_tball # trabecular bone binary image segmentation folders for FMNH 218405, Phloeomys cumingi
| |-- FMNH_218405_Phloeomys_cumingi_tball_L03 # trabecular bone binary image stack (252 images, .tiff) for third lumbar vertebra of FMNH 218405, Phloeomys cumingi
Phloeomys pallidus
|-- FMNH_214158_Phloeomys_pallidus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 214158, Phloeomys pallidus
| |-- FMNH_214158_Phloeomys_pallidus_VOIs # All files relevant to FMNH 214158, Phloeomys pallidus
| |-- FMNH_214158_Phloeomys_pallidus_forspacing # non-bone/background binary image segmentation folders for FMNH 214158, Phloeomys pallidus
| |-- FMNH_214158_Phloeomys_pallidus_forspacing_L03 # non-bone/background binary image stack (225 images, .tiff) for third lumbar vertebra of FMNH 214158, Phloeomys pallidus
| |--FMNH_214158_Phloeomys_pallidus_tball # trabecular bone binary image segmentation folders for FMNH 214158, Phloeomys pallidus
| |-- FMNH_214158_Phloeomys_pallidus_tball_L03 # trabecular bone binary image stack (226 images, .tiff) for third lumbar vertebra of FMNH 214158, Phloeomys pallidus
|-- FMNH_214419_Phloeomys_pallidus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 214419, Phloeomys pallidus
| |-- FMNH_214419_Phloeomys_pallidus_VOIs # All files relevant to FMNH 214419, Phloeomys pallidus
| |-- FMNH_214419_Phloeomys_pallidus_forspacing # non-bone/background binary image segmentation folders for FMNH 214419, Phloeomys pallidus
| |-- FMNH_214419_Phloeomys_pallidus_forspacing_L03 # non-bone/background binary image stack (261 images, .tiff) for third lumbar vertebra of FMNH 214419, Phloeomys pallidus
| |--FMNH_214419_Phloeomys_pallidus_tball # trabecular bone binary image segmentation folders for FMNH 214419, Phloeomys pallidus
| |-- FMNH_214419_Phloeomys_pallidus_tball_L03 # trabecular bone binary image stack (261 images, .tiff) for third lumbar vertebra of FMNH 214419, Phloeomys pallidus
|-- FMNH_216486_Phloeomys_pallidus_VOIs.zip # Zipped parent file for images from Field Museum of Natural History (FMNH) specimen no. 216486, Phloeomys pallidus
| |-- FMNH_216486_Phloeomys_pallidus_VOIs # All files relevant to FMNH 216486, Phloeomys pallidus
| |-- FMNH_216486_Phloeomys_pallidus_forspacing # non-bone/background binary image segmentation folders for FMNH 216486, Phloeomys pallidus
| |-- FMNH_216486_Phloeomys_pallidus_forspacing_L03 # non-bone/background binary image stack (186 images, .tiff) for third lumbar vertebra of FMNH 216486, Phloeomys pallidus
| |--FMNH_216486_Phloeomys_pallidus_tball # trabecular bone binary image segmentation folders for FMNH 216486, Phloeomys pallidus
| |-- FMNH_216486_Phloeomys_pallidus_tball_L03 # trabecular bone binary image stack (188 images, .tiff) for third lumbar vertebra of FMNH 216486, Phloeomys pallidus
Scans of murine vertebral columns (museum specimens sourced from the Field Museum of Natural History) were collected using a GE Phoenix v|tome|x µCT scanner. Spherical VOIs were chosen and segmented in ORS Dragonfly 2021. Trabecular bone morphological data were collected from medullary cavity VOIs using Dragonfly and BoneJ. See the publication Methods section for additional details.