Two Metschnikowia nectar yeast species have similar volatile profiles, but elicit differential foraging in bee pollinators
Data files
Dec 16, 2025 version files 1.19 MB
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01_nectar_sampling_flower-data.csv
22.09 KB
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02_nectar_sampling_flower-data_readme.csv
429 B
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03_Compiled_Nectar_Sampling_9-19-24.csv
3.17 KB
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04_Compiled_Nectar_Sampling_9-19-24_readme.csv
524 B
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05_mf_obs_visitor_data_cl.csv
1.05 MB
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06_mf_obs_visitor_data_cl_readme.csv
1 KB
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07_mf_byobs_plant_data_cl.csv
4.87 KB
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08_mf_byobs_plant_data_cl_readme.csv
1.88 KB
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09_MKMR_comp_data_init_thresh_10.0.csv
42.05 KB
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10_MKMR_comp_data_init_thresh_10.0_readme.csv
439 B
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11_Metschnikowia_growth_assays_Counts.csv
441 B
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12_Metschnikowia_growth_assays_Counts_readme.csv
195 B
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bee-yeast_mss_analyses.R
12.57 KB
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bee-yeast_mss_figures.R
40.20 KB
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README.md
7.32 KB
Abstract
Nectar yeasts are a highly specialized group of fungi that may play key roles in pollination ecology. Nectar yeasts lack an independent dispersal mechanism to access new habitats with fresh resources. Yeasts, bumblebee pollinators, and flowering plants likely take part in a series of diffuse mutualisms, wherein yeasts attract bees that provide phoretic travel between flowers. This interaction is thought to provide bees with improved foraging efficiency and plants with increased pollinator visitation and associated pollination services. However, the underlying mechanisms driving bee pollinator preferences for nectar with yeast and differences among yeast species in eliciting pollinator behavior are relatively unexplored. We used an integrative approach to elucidate the underpinnings of bee pollinator preference for nectars that contain yeasts. We conducted a survey of local flower nectar for the presence and species diversity of yeast. Using two prominent, local nectar yeast species (Metschnikowia reukaufii and Metschnikowia koreensis), we conducted observational field trials to ascertain the effects of the presence and identity of nectar yeast on bee visitation rates. We also analyzed the volatile profiles of both yeast species to explore if olfactory cues are associated with differential foraging behavior. We found that M. reukaufii was the most common nectar yeast in our study area in the Southeastern USA, as did previously published global surveys. Intriguingly, we found co-occurrence of multiple yeast species in 22% of samples, all of which contained M. reukaufii and another yeast typically from the Metschnikowia genus, such as M. koreensis. In a field trial, we found that bee pollinators had higher visitation to flowers supplemented with M. koreensis over sterile flowers, while no difference in bee foraging behavior was evident in response to M. reukaufii. Despite this behavioral difference, the volatile profiles of both yeast species were not significantly different from one another, indicating that some other mechanism, possibly related to gustation, underlies bee-yeast communication. The ecology and species interactions of wild yeasts are poorly understood, yet they may play vital roles in many ecosystems. Our research highlights the importance of studying facultative mutualisms and the necessity of testing their underlying assumptions. Elucidating the mechanisms behind insect-microbe symbioses will open new horizons in pollinator ecology and conservation.
Dataset DOI: 10.5061/dryad.n02v6wx8m
Description of the data and file structure
We used an integrative approach to elucidate the underpinnings of bee pollinator preference for nectars that contain yeasts. We conducted a survey of local flower nectar for presence and species diversity of yeast. Using two prominent, local nectar yeast species (Metschnikowia reukaufii and Metschnikowia koreensis), we conducted observational field trials to ascertain the effects of the presence and identity of nectar yeast on bee visitation rates. We also analyzed the volatile profiles of both yeast species to explore if olfactory cues were associated with differential foraging behavior.
Files and variables
Files and variables
NAs or empty cells = missing or inappropriate data for all data files
File: 01_nectar_sampling_flower-data.csv
Description: Data for flowers sampled for yeast presence across the Research Triangle, NC
Variables
- sample_id: unique flower sample ID
- date_coll: date the sample was collected
- date_bagged: the date the flower was bagged to prevent pollinator feeding (if applicable)
- flower_com: common name of the flower
- flower_sp: species of the flower
- flower_family: family of the flower
- gps_coord: gps coordinates of the sampling site
- loc: location of sampling
- loc_type: location type of sampling (rural, urban)
- coll_notes: notes on the collection
File: 02_nectar_sampling_flower-data_readme.csv
Description: Readme for nectar_sampling_flower_data.csv
File: 03_Compiled_Nectar_Sampling_9-19-24.csv
Description: data of cultured nectar samples
Variables
- sample_id: unique ID for each nectar sample
- loc_type: whether the collection location was rural or urban
- num_colonies: number of unique colonies isolated from the nectar sample
- num_positive: number of unique colonies that were PCR positive and Sanger sequenced
- num_unq_species: number of unique species found from the nectar sample
- Genus 1: genus of first yeast found in sample
- Species 1: species of first yeast found in sample
- Genus 2: genus of second yeast found in sample
- Species 2: species of second yeast found in sample
File: 04_Compiled_Nectar_Sampling_9-19-24_readme.csv
Description: Readme file for Compiled_Nectar_Sampling_9-19-24.csv
File: 05_mf_obs_visitor_data_cl.csv
Description: data of pollinator observations in experimental field trial with two species of nectar yeast. transcribed from audio recordings tracking pollinator activity in field plot
Variables
- obs_id: Unique observed insect ID
- date_trial: date of the trial
- trial_id: unique ID of the trial
- yeast_sp: yeast species used in the trial
- yeast_strain: yeast strain used in the trial
- plant_sp: plant species
- poll_sp: pollinator species
- plant_trt: plant treatment: y = inoculated with yeast; ny = inoculated with sterile nectar
- plant_tot_fl: the total number of flowers on the plant for that trial
- plant_id: plant ID
- plant_loc: plant location in the plot for that trial
- flower_num: the sequential number of flower visits for that unique observed pollinator
- time_start: time between flower nectarings
- time_end: counter for total number of observations
- notes: notes about that observation
- time_interval: time between flower nectarings
- numbering: counter for total number of observations
- time_start_sec: time started in seconds
- time_end_sec: time ended in seconds
- vst_dur: duration of each flower visit (time_end_sec – time_start_sec)
- plant_sort: sorting rows to be kept for final analyses (data) vs those that were preliminary (prelim)
- poll_class: general type of pollinator for that row
File: 06_mf_obs_visitor_data_cl_readme.csv
Description: Readme file for 05_mf_obs_visitor_data_cl.csv
File: 07_mf_byobs_plant_data_cl.csv
Description: Plant data for experimental field trials
Variables
- plant_id: unique plant ID
- date_trial_1: date of trial 1
- plant_loc_1: location of the plant on the grid of trial 1
- plant_trt_1: plant treatment for trial 1
- plant_tot_fl_1: total number of flowers on plant for trial 1
- yeast_sp_1: yeast species used in trial 1
- date_trial_2: date of trial 2
- plant_loc_2: location of the plant on the grid of trial 2
- plant_trt_2: plant treatment for trial 2
- plant_tot_fl_2: total number of flowers on plant for trial 2
- yeast_sp_2: yeast species used in trial 2
- date_trial_3: date of trial 3
- plant_loc_3
- plant_trt_3
- plant_tot_fl_3
- yeast_sp_3
- date_trial_4
- plant_loc_4
- plant_trt_4
- plant_tot_fl_4
- yeast_sp_4
- date_trial_5
- plant_loc_5
- plant_trt_5
- plant_tot_fl_5
- yeast_sp_5
- date_trial_6
- plant_loc_6
- plant_trt_6
- plant_tot_fl_6
- yeast_sp_6
- date_trial_7
- plant_loc_7
- plant_trt_7
- plant_tot_fl_7
- yeast_sp_7
- date_trial_8
- plant_loc_8
- plant_trt_8
- plant_tot_fl_8
- yeast_sp_8
File: 08_mf_byobs_plant_data_cl_readme.csv
Description: Readme file for 07_mf_byobs_plant_data_cl.csv
File: 09_MKMR_comp_data_init_thresh_10.0.csv
Description: Chemical analyses of volatiles from GCMS of two species of yeast
Variables
- sample: yeast culture sample ID, combination of strain ID (s2_1 or s3_1) and replicate (a-e)
- species: yeast species
- date_dil: date the yeast culture was diluted
- date_gcms: date the volatiles were analysed on the gc-ms
- ret_time: retention time of the peak
- area: area of the peak
- chem_name: chemical names of the peak
- qual: confidence in peak identify
- com_chem_name: common chemical name (for standardization)
- notes: any notes on the peak
File: 10_MKMR_comp_data_init_thresh_10.0_readme.csv
Description: Readme file of 09_MKMR_comp_data_init_thresh_10.0.csv
File: 11_Metschnikowia_growth_assays_Counts.csv
Description: Test of effect of refrigeration on yeast strain growth
Variables
- strain: strain ID: s2_1 = M. reukaufii, s3_1 = M. koreensis
- day: number of days kept at 4C
- rep: replicate number
- count: number of CFUs after 24-72 hours after removal from 4C and growth at 25C
File: 12_Metschnikowia_growth_assays_Counts_readme.csv
Description: Readme file for 11_Metschnikowia_growth_assays_Counts.csv
File: bee-yeast_mss_analyses.R
Description: R script for analyses in manuscript. This code cleans and integrates field observations, yeast volatile profiles, and growth assays to quantify how different yeast treatments affect bee visitation behavior, followed by mixed‐effects models testing treatment effects on visitation metrics and visit duration.
File: bee-yeast_mss_figures.R
Description: R script for figures in manuscript. This code cleans and merges nectar sampling data with yeast identity, bee visitation observations, and yeast volatile profiles to characterize yeast presence in nectar and prepare integrated datasets for comparing microbial composition, chemistry, and pollinator interactions.
Code/software
None
Access information
Other publicly accessible locations of the data:
- none
Data was derived from the following sources:
- self
