Data from: Boost or Bust? The impact of supplementation on functional genetic diversity and selective processes in Tasmanian devils
Data files
May 12, 2026 version files 3.75 MB
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README.md
2.03 KB
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Schraven_et_al._Molecular_Ecology_Functional_data.xlsx
3.75 MB
Abstract
Translocating individuals into existing populations of conspecifics can support threatened species by increasing population size, maintaining genetic diversity, and reducing the risk of inbreeding. However, for species whose adaptive potential is compromised due to ongoing threats, like disease, the outcome of such management interventions becomes more complex. The Tasmanian devil (Sarcophilus harrisii) is a prime example, where the emergence of Devil Facial Tumour Disease (DFTD) has led to significant population declines, raising concerns about their long-term survival. It is therefore critical to understand if the introduction of new functional genetic variants through supplementation actions enhances or potentially hinders their long-term persistence. We investigated changes in functional gene diversity at both the population- and individual-levels, pre and post supplementation, across multiple wild devil sites (four supplemented and four not supplemented). We found that functional diversity increased post-supplementation. Though the magnitude of change was varied among sites, a similar site-specific pattern was also evident in genome-wide diversity. Importantly, we saw no evidence of swamping of local alleles or those putatively associated with DFTD regressions. This is likely due to the source population representing the broad wild genetic diversity and supplementations facilitating gene flow across the current fragmented landscape. Continued and long-term monitoring at multiple wild sites will be necessary to determine whether future generations retain this introduced genetic variation.
General Information
- Dates of data collection: 2014 to 2022
- Geographic location of data collection: Tasmanian devil wild sites, Tasmania Australia.
Files and variables
File: Schraven_et_al._Molecular_Ecology_Functional_data.xlsx
Description: The Excel workbook contains five sheets. For details of SNP calling and filtering, see the Methods section of the paper.
Variables
- README.md
- Metadata (sheet 1) - contains the list of devil sample IDs and associated site metadata. Metadata includes the sex, site, site type, pre/post supplementation trapped, and individual ancestry. Sample IDs are named with F (female), M (male), H (hermaphrodite), U (sex unknown) as the prefix, followed by their location (site), and an individual identifier per location. This is then followed by site type with S (supplemented), and NS (not supplemented) as the prefix, and then the ancestry with H (hybrid), I (incumbent), and NA (not applicable) as the prefix.
- Data (sheet 2) - contains the unlinked SNP genotypes in a one-row format for 385 devil samples generated for functional diversity analysis.
- Data (sheet 3) - contains the linked SNP genotypes in a one-row format for 385 devil samples generated for functional diversity analysis.
- Data (sheet 4) - contains the MHC I alleles for 347 devil samples.
- Data (sheet 5) - contains the genome-wide genotypes in one-row format for 372 devil samples generated using DArT proprietary pipeline.
Code/software
See the Methods section of the paper for all information regarding codes and software used.
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- Genetic data was derived from Tasmanian devil tissue samples (ear biopsies) collected from 2014 to 2022 during annual monitoring trips run by the Save the Tasmanian Devil Program (STDP)
