Data for: Nitrogen deposition interacts with water availability to influence herbivore abundance and herbivory on red maple (Acer rubrum L.)
Data files
Jun 05, 2026 version files 505.70 KB
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2020_water_potential_all.csv
9.81 KB
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b2_2021.csv
12.19 KB
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b3_2021.csv
12.10 KB
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b4_2021.csv
12.19 KB
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basal_area.Rmd
22.89 KB
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basal_growth_2020.csv
15.42 KB
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basal_growth_2021.csv
17.02 KB
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beat_samples_200623.csv
13.17 KB
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common_packages.R
853 B
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e_tyrius_2020.csv
8.88 KB
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e_tyrius_2021-1.csv
8.95 KB
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estimates.Rmd
2.03 KB
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etyrius.Rmd
18.93 KB
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height_2020.csv
9.48 KB
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height_2021-1.csv
10.46 KB
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height.Rmd
21.61 KB
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maple_shoot_borer_2020.csv
8.81 KB
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paesculana_2021.csv
9.77 KB
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paesculana.Rmd
18.14 KB
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plh_2021.csv
21.38 KB
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PLH_abundance.Rmd
18.56 KB
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plh_damage_2020_round2.csv
8.31 KB
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PLH_damage.Rmd
22.62 KB
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PMA_abundance.Rmd
19.48 KB
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README.md
23.04 KB
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smcomplete_2021.csv
51.68 KB
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soil_moisture_200620.csv
11.60 KB
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soil_moisture_200702.csv
20.66 KB
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soil_moisture_200822.csv
17.78 KB
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soilmost.Rmd
24.52 KB
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water_potential.Rmd
18.02 KB
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wp_2021.csv
15.35 KB
Abstract
Urban trees are subject to elevated nitrogen (N) deposition and water stress. The combination of water stress and N deposition may contribute to more frequent and severe pest outbreaks among urban trees. To test for an interaction between N and water, we conducted a two year common garden experiment with potted Acer rubrum L in which we simulated N deposition and lowered water availability in a factorial design. We hypothesized that combined N deposition and water stress would cause trees to have more water stress, insect herbivores, and herbivory compared to either factor in isolation. We found that simulated N deposition and water availability interact to affect tree and herbivore performance: tree height, sap feeding and shoot feeding insects all responded to N x water interactions in at least one year of the study. We observed that high N trees had more growth, insects, and herbivory, suggesting that urban N deposition could elicit changes in trees and herbivores. However, we did not find that N treatments exacerbated tree water stress as predicted. Intraspecific response diversity to N deposition and water availability in this study supports planting diverse tree genotypes to buffer against effects of drought, N deposition, and other disturbances.
Dataset DOI: 10.5061/dryad.ncjsxkt9j
Description of the data and file structure
Data is from a 2020-21 common garden experiment containing 192 potted red maple trees. Three digit PlantIDs were assigned to each tree and are associated with each observation. Data can be broadly categorized as environmental (volumetric soil moisture %), tree growth and physiology (diameter, height, water potential), and herbivore-related (painted maple aphid abundance, leafhopper abundance, leafhopper herbivory, stem borer herbivory, leaf tier herbivory). Information related to treatments (Nitrogen: high, medium and low; Water: high and low; Genotype: wildtype, Autumn Flame, October Glory, Sun Valley) are included as separate columns in each dataset.
Files and variables
File: plh_damage_2020_round2.csv
Description: survey of potato leafhopper (Empoasca fabae) feeding
Variables
- PlantID: unique identifier of tree
- PLH_shoots_R2: number of shoots with potato leafhopper feeding (randomly selected)
- Shoot_num: total number of shoots surveyed
- Prop_PLH_R2: proportion of shoots with PLH feeding
- Treatment: combined Water and Nitrogen treatments
- Genotype: genotype ID. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD
- Irrigation_line: Irrigation line associated with the pot
- Notes: notes made during observations
File: basal_growth_2020.csv
Description: basal area growth of trees in 2020
Variables
- PlantID: unique identifier of tree
- diam.post: post-season diameter at 10cm above soil surface (mm)
- diam.pre: pre-season diameter at 10cm above soil surface (mm)
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- basal.pre: basal area pre-season (mm2)
- basal.post: basal area post-season (mm2)
- basal.growth: post season basal area - pre-season basal area (mm2)
File: maple_shoot_borer_2020.csv
Description: feeding of maple shoot borer (Proteoterus aesculana) in 2020
Variables
- PlantID: unique identifier of tree
- Total_shoots: total number of shoots on each tree
- P_aesculana: Number of shoots with P. aesculana feeding
- Date: date surveyed
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: soil_moisture_200822.csv
Description: volumetric soil moisture recorded with soil moisture probe - August 2020. Data for plants 617-624 missing due to sensor malfunction.
Variables
- PlantID: unique identifier of tree
- Top-1: volumetric soil moisture % from top of pot subsample 1
- Top-2: volumetric soil moisture % from top of pot subsample 2
- Top-3: volumetric soil moisture % from top of pot subsample 3
- Bottom-4: volumetric soil moisture % from bottom of pot subsample 4
- Bottom-5: volumetric soil moisture % from bottom of pot subsample 5
- Bottom-6: volumetric soil moisture % from bottom of pot subsample 6
- Total_average: volumetric soil moisture % average of all subsamples
- Meter: meter used
- Date measured: date of observation
- Time measured: time of observation
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: soil_moisture_200702.csv
Description: volumetric soil moisture recorded with soil moisture probe - July 2020
Variables
- PlantID: unique identifier of tree
- Top-1: volumetric soil moisture % from top of pot subsample 1
- Top-2: volumetric soil moisture % from top of pot subsample 2
- Top-3: volumetric soil moisture % from top of pot subsample 3
- Bottom-4: volumetric soil moisture % from bottom of pot subsample 4
- Bottom-5: volumetric soil moisture % from bottom of pot subsample 5
- Bottom-6: volumetric soil moisture % from bottom of pot subsample 6
- Total_average: average of all subsamples
- Meter: meter used
- Date measured: date of observation
- Time measured: time of observation
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: height_2020.csv
Description: stem heights from soil surface to tallest shoot (cm) in 2020
Variables
- PlantID: unique identifier of tree
- height.post: post-season stem height (cm)
- height.pre: pre-season stem height (cm)
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- height.change: change in stem height (postseason - preseason height) cm
File: soil_moisture_200620.csv
Description: volumetric soil moisture recorded June 2020
Variables
- PlantID: unique identifier of tree
- Top-1: subsample of soil moisture (%) recorded from top of pot
- Top-2: subsample of soil moisture (%) recorded from top of pot
- Total_average: percent soil moisture (average of subsamples)
- Meter: meter used
- Date measured: date of observation
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: e_tyrius_2020.csv
Description: observations of Episimus tyrius feeding in 2020
Variables
- PlantID: unique identifier of tree
- Total_shoots: total number of shoots on tree
- E_tyrius: number of shoots with evidence of E. tyrius feeding
- Date: date of observation
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: beat_samples_200623.csv
Description: insect abundance recorded from beat samples collected in 2020. Only partial data available for mites. Mites were not included in analysis.
Variables
- PlantID: unique identifier of tree
- SampleID: unique identifier of sample
- PLH_nymphs: count of potato leafhopper nymphs
- PLH_adults: count of potato leafhopper adults
- Aphid_nymphs: count of painted maple aphid nymphs
- Aphid_adults: count of painted maple aphid adults
- Phytoseiid_mites: count of phytoseiid mites
- Stigmaeid_mites: count of stigmaeid mites
- Total_PLH: total potato leafhoppers (adults and nymphs)
- Total_Aphid: total aphids (adults and nymphs)
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- Date_collected: date of observation
File: 2020_water_potential_all.csv
Description: all water potential data recorded in 2020. Missing values for dead trees or missed sample.
Variables
- PlantID: unique identifier of tree
- No_leaves: number of leaves on shoot used for observation
- Date: date of observation
- MPa: water potential (MPa)
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: paesculana_2021.csv
Description: Incidence of feeding by Proteoterus aesculana in 2021. Missing values due to dead trees, and three values that were not recorded.
Variables
- Observer: person who made observation
- Date Recorded: date of observation
- PlantID: unique identifier of tree
- P_aesculana: Number of shoots with P. aesculana feeding
- TotalShoots: Total number of shoots on tree
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Block: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: e_tyrius_2021-1.csv
Description: Feeding of Episimus tyrius observed in 2021. Missing values due to dead trees.
Variables
- PlantID: unique identifier of tree
- Date: date of observation
- E_tyrius: number of tree shoots with E. tyrius feeding
- Total_shoots: total number of shoots on tree
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: basal_growth_2021.csv
Description: basal area growth calculated from tree trunk diameters at 10cm above soil surface at the beginning and end of the 2021 growing season
Variables
- PlantID: unique identifier of tree
- diam.pre: pre-season tree trunk diameter (mm)
- diam.post: post-season tree trunk diameter (mm)
- Observer: person who recorded data
- Date: date of recording
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- basal.pre: preseason basal area calculated from diameter (mm^2)
- basal.post: post-season basal area calculated from diameter (mm^2)
- basal.growth: change in basal area (post season - preseason basal area)
File: wp_2021.csv
Description: Water potential (MPa) recorded on each tree across multiple dates in 2021. Missing values due to dead trees.
Variables
- ObsId: unique identifier of observation
- Observer: person who recorded data
- Date: date recorded
- PlantID: unique identifier of tree
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Block: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- WaterPot: water potential (MPa)
- NoLeaves: number of leaves on the shoot that was measured
- Start: start time
- End: end time
File: height_2021-1.csv
Description: height of tallest tree stem from soil surface (cm) in 2021
Variables
- PlantID: unique identifier of tree
- Observer: person making observation
- Date: date of observation
- height.pre: pre-season height in 2021
- height.post: post-season height in 2021
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
- height.change: post-season height - pre-season height
File: plh_2021.csv
Description: potato leafhopper feeding surveyed in 2021. Missing values due to dead trees.
Variables
- ObsId: unique identifier of observation
- Observer: person who observed
- Date: date of observation
- PlantID: unique identifier of tree
- DamagedShoots: number of shoots with PLH feeding out of 10 randomly selected shoots
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Block: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: smcomplete_2021.csv
Description: all volumetric soil moisture recorded in 2021. Missing values due to dead trees.
Variables
- ObsId: unique observation ID
- Observer: person who recorded data
- Date: date of observation
- Month: month of observation
- PlantID: unique identifier of tree
- SoilMoist: percent soil moisture
- Time: time of observation
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Block: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: b2_2021.csv
Description: round 2 of beat samples collected in 2021. Missing values due to dead trees.
Variables
- ObsId: unique identifier of observation
- Observer: person who counted insects in sample
- Date: date of sample processing
- Round: round of sampling
- PlantID: unique identifier of tree
- PLHNymphs: potato leafhopper nymphs
- PLHAdults: potato leafhopper adults
- PMANymphs: painted maple aphid nymphs
- PMAadults: painted maple aphid adults
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: b3_2021.csv
Description: round 3 of beat sample collection. All variables are the same as in b2_2021.csv. Missing values due to dead trees.
Variables
- ObsId: unique identifier of observation
- Observer: person who counted insects in sample
- Date: date of sample processing
- Round: round of sampling
- PlantID: unique identifier of tree
- PLHNymphs: potato leafhopper nymphs
- PLHAdults: potato leafhopper adults
- PMANymphs: painted maple aphid nymphs
- PMAadults: painted maple aphid adults
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
File: b4_2021.csv
Description: round 4 of beat sample collection. All variables are the same as in b2_2021.csv. Missing values due to dead trees.
Variables
- ObsId: unique identifier of observation
- Observer: person who counted insects in sample
- Date: date of sample processing
- Round: round of sampling
- PlantID: unique identifier of tree
- PLHNymphs: potato leafhopper nymphs
- PLHAdults: potato leafhopper adults
- PMANymphs: painted maple aphid nymphs
- PMAadults: painted maple aphid adults
- Treatment: a combination of Nitrogen and Water treatment designations
- Genotype: genotype of red maple tree. SV = Sun Valley, WT = wildtype, AF = Autumn Flame, OG = October Glory
- Nitrogen: Nitrogen treatment (in spreadsheets denoted as none, low, high, this is changed to low, medium, high in analysis)
- Water: Water treatment (in spreadsheets denoted as drt and norm, this is changed to low and high in analysis)
- Rep: block in RCBD design
- Irrigation_line: irrigation line watering the tree of interest
- Notes: notes made during observation
Code/software
All analyses were performed in R version 4.0.3 and RStudio version 1.4.1106.
We modeled each response using linear models, linear mixed-effect models, generalized linear models, or generalized linear mixed-effect models, depending on the data type and model fit, using lme4 1.1.27.1
We performed Wald chi-square tests to assess the significance of fixed effects using Type II ANOVA with car 3.0.13
We plotted residuals graphically and confirmed they met model assumptions using DHARMa 0.4.7
We performed post hoc tests using emmeans 1.6.0
We found that 2021 E. tyrius data were underdispersed with a generalized linear mixed-effect model with Poisson distribution, therefore, we fit a generalized Poisson regression model with glmmTMB 1.1.3
All R Markdown (.rmd) files used in analysis are provided and listed below:
File: basal_area.Rmd
Description: analysis and plotting of basal area growth
File: estimates.Rmd
Description: generate adjusted q-values reported in supplemental tables S2-S19
File: etyrius.Rmd
Description: analysis and plotting of E. tyrius feeding
File: height.Rmd
Description: analysis and plotting of change in stem height
File: paesculana.Rmd
Description: analysis and plotting of P. aesculana feeding
File: PLH_abundance.Rmd
Description: analysis and plotting of potato leafhopper abundance
File: PLH_damage.Rmd
Description: analysis and plotting of potato leafhopper feeding
File: PMA_abundance.Rmd
Description: analysis and plotting of painted maple aphid abundance
File: soilmost.Rmd
Description: analysis and plotting of percent soil moisture
File: water_potential.Rmd
Description: analysis and plotting of water potential
File: common_packages.R
Description: common packages used in analysis in R
Access information
Other publicly accessible locations of the data:
- NA
Data was derived from the following sources:
- field observations
