Data from: Infection and host-feeding patterns of West Nile virus vectors varies by urban greenspace composition
Data files
Dec 13, 2025 version files 114.84 KB
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avian_data.csv
2.13 KB
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bloodmeal_data.csv
15.37 KB
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camera_trap_data.csv
2.25 KB
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Culex_F_per_trap.csv
32.31 KB
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iButton_bydate_bysite.csv
4.84 KB
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MULC_1000m.csv
848 B
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NLCD_1000m.csv
223 B
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pools_WNV_inf.csv
47.75 KB
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README.md
9.13 KB
Abstract
Greenspaces are integral to the urban environment, enhancing climate resilience and providing several additional environmental, social, and public health benefits, yet the extent to which they affect vector-borne disease transmission is not clear. We explored this question in the context of mosquito and West Nile virus (WNV) host populations, infection rates, and foraging behavior. We collected mosquitoes from greenspaces along a transect spanning a range of urban development. Mosquitoes were tested for West Nile virus, and the host species that were fed on was determined for blood-fed specimens. Bird counts and camera traps were used to assess avian and mammal species availability. We explored landcover associations with vector abundance, vector infection prevalence, host-feeding pattern,s and host community composition.
Different components that contribute to WNV transmission intensity responded to different landcover variables. Abundance of Culex mosquitoes was most strongly tied to impervious surface, while prevalence of WNV infection was positively associated with increasing amounts of turf grass, but not through an indirect effect of vapor pressure deficit. The amount of turf was itself correlated with a measure of avian community reservoir competence. Blood meal analysis suggested the majority of blood meals in Cx. pipiens and Cx. restuans came from American robins and northern cardinals. This work provides novel insights into how reliance on managed turf grass for urban landscaping may have adverse consequences for WNV transmission risk and furthers our understanding of how the design of urban greenspaces could benefit from consideration of vector-host-virus interactions.
Dataset DOI: 10.5061/dryad.nk98sf84h
Description of the data and file structure
These files contain data required to reproduce analyses in the associated paper examining how the composition and extent of urban greenspace influences the abundance, host feeding behavior and West Nile virus (WNV) infection prevalence of Culex (Cx.) spp. mosquitoes at ten locations along a gradient of urban development intensity in the Greater Chicago area. Mosquitoes were collected weekly from multiple traps at each location, 25 June to 25 September 2019. Unfed, female specimens were pooled and tested by RT-PCR for the presence of WNV RNA. Vertebrate DNA was extracted from blood engorged Culex (Cx.) spp. females and sequenced to determine host identity. Point count surveys and camera traps were used at each site to estimate relative abundance of avian and mammalian host species, respectively. Estimates of land cover were extracted from a 1000 m radius of each sampling site.
Files and variables
File: bloodmeal_data.csv
Description: Contains vertebrate host identification for individual bloodfed Culex (Cx.) spp. females.
Variables
- Samples: unique specimen ID code
- Site: unique site ID
- Trap type: sampling device used (Gravid = CDC gravid trap; Light = CDC light trap, BGS = BG Sentinel-2 trap)
- Mosq_Species: mosquito species
- Coll_date: date of collection
- Major host: species with the highest read number (number of sequences mapping to that host species) based on MiSeq sequencing
File: avian_data.csv
Description: Contains the average number of detections of each avian species in 15-minute point count surveys conducted at each study site.
Variables
- Site: unique site ID
- Species: total number of avian species detected
- Visits: total number of point counts performed at the site
All values in all other columns below ("American Crow" to "Yellow-throated Warbler") indicate the average number of detections of each species
File: camera_trap_data.csv
Description: Contains the frequency of detection of ten mammalian hosts at each site in camera traps operating between June 17 and August 14, and between September 17 and November 14, 2019
Variables
- Species: vertebrate species detected
- CameraID: unique camera trap ID
- Site: unique site ID
- Start: start date of camera trap observations
- End: end date of camera trap observations
- Y: number of days on which the mammal was detected
- J: number of days the camera trap was active
- PropDetect: proportion of days where the mammal was detected
File: Culex_F_per_trap.csv
Description: Contains the number of female Culex (Cx.) spp. specimens collected per trap sample
Variables
- Site: unique site ID
- Trap_Loc: unique trap location within site (A, B, C, D or E)
- Trap_Type: mosquito collection device (Light = CDC light trap; Gravid = CDC gravid trap; BGS = BG Sentinel 2 trap)
- Full_sample: binary field identifying sampling dates when trap samples were collected at all 10 sites (Full_sample = 1), and sampling dates when mosquito sampling was not conducted at one or more sites (Full_sample = 0)
- Coll_Date: date when trap sample was collected
- F_Cx_pipi: total number of female Culex pipiens in sample
- F_Cx_rest: total number of female Culex restuans in sample
- F_Cx_sali: total number of female Culex salinarius in sample
- F_Cx_sp: total number of Culex (Cx.) spp. females in sample that were not identified to species
File: MULC_1000m.csv
Description: Percent area within a 1000 m radius buffer around trap locations at each site that is represented by each land cover class in a modified version of the USEPA EnviroAtlas “Meter-Scale Urban Land Cover” dataset
Variables
- Site: unique site ID
- MULC_BLDG_1000m: % area represented by building footprints
- MULC_NISA_1000m: % area represented by impervious surface, excluding building footprints
- MULC_TREE_1000m: % area represented by tree canopy (vegetation > 2 m in height)
- MULC_TURF_1000m: % area represented by turf grass
- MULC_NGRS_1000m: % area represented by grass / herbaceous vegetation (<= 2 m height), excluding turf grass cover
- MULC_BARE_1000m: % area represented by soil and barren surfaces
- MULC_CROP_1000m: % area represented by row crops
- MULC_WATR_1000m: % area represented by open water
- MULC_WWET_1000m: % area represented by woody wetlands
- MULC_EWET_1000m: % area represented by emergent wetlands
File: NLCD_1000m.csv
Description: Average percent 2019 NLCD impervious and tree canopy cover within a 1000 m radius buffer around trap locations at each site
Variables
- Site: unique site ID
- NLCD_ISA_1000m: % impervious surface cover
- NLCD_TCA_1000m: % tree canopy cover
File: iButton_bydate_bysite.csv
Description: Contains average air temperature, % relative humidity and vapor pressure deficit values for each site, for each sampling date. These aggregate values were derived from 10-minute interval records obtained from iButton logger suspended 30 cm from a CDC light trap, at a height of ~1.5 m, below an inverted 250 ml white paper cup to shield the logger from exposure to rain or direct sunlight.
Variables
- Start_date: date of sunset
- Site: unique site ID
- T_NOC: mean air temperature at site from sunset to sunrise (° C)
- RH_NOC: mean % relative humidity at site from sunset to sunrise
- T_NOC_GA: overall mean air temperature, averaged across all 10 sites, from sunset to sunrise (° C)
- RH_NOC_GA: overall mean % relative humidity, averaged across all 10 sites, from sunset to sunrise
- T_NOC_dev: average difference between site air temperature and overall mean air temperature across all 10 sites (° C)
- RH_NOC_dev: average difference between site % relative humidity and overall mean % relative humidity across all 10 sites
- VPD_SSto4: mean vapor pressure deficit at site, sunset to 4-hours post-sunset (kPa)
- VPD_4toSR: mean vapor pressure deficit at site, 4-hours post-sunset to sunrise (kPa)
File: pools_WNV_inf.csv
Description: Contains description of all pools of Culex (Cx.) spp. females screened for WNV RNA by RT-PCR
Variables
- Pool_ID: unique ID assigned to mosquito pool
- Site: unique site ID
- Coll_Date: date when trap sample was collected
- Full_sample: binary field identifying sampling dates when trap samples were collected at all 10 sites (Full_sample = 1), and sampling dates when mosquito sampling was not conducted at one or more sites (Full_sample = 0)
- Species: mosquito species
- Source: sampling device(s) used to collect specimens in pool (GRAV = CDC gravid trap only; LT/BG = CDC light trap and/or BG Sentinel-2 trap only; MIX = CDC gravid trap + CDC light trap and/or BG Sentinel-2 trap)
- Specimens: number of female specimens in pool
- INF_STATUS: binary field indication whether pool was negative (INF_STATUS = 0), or positive (INF_STATUS = 1), for WNV RNA
Code/software
Statistical analyses were performed in R version 4.4.1 (https://www.r-project.org/). The PoolTestR package was used to estimate maximum likelihood estimates of the prevalence of infection for West Nile virus in mosquito pools (https://doi.org/10.32614/CRAN.package.PoolTestR). Correlation matrices were created using the PerformanceAnalytics package (https://doi.org/10.32614/CRAN.package.PerformanceAnalytics). Monte Carlo multinomial tests were performed using the EMT package (https://doi.org/10.32614/CRAN.package.EMT). Structural equation models were performed using the piecewiseSEM package (Lefcheck, 2016, https://doi.org/10.32614/CRAN.package.piecewiseSEM).
Access information
Land cover data (NLCD_1000m.csv, MULC_1000m.csv) were derived from the following sources:
- National Land Cover Database: 2019 Fractional Impervious Surface, 2019 Tree Canopy Cover (https://www.mrlc.gov/data)
- US EPA EnviroAtlas Meter-Scale Urban Land Cover (https://doi.org/10.3390/rs12121909)
- Microsoft US Building Footprint Dataset (https://github.com/microsoft/USBuildingFootprints)
- Chicago Metropolitan Agency for Planning (CMAP) Land Use Inventory (https://cmap.illinois.gov/data/land-use/land-use-inventory/)
- 2018 Illinois Cropland Data Layer (https://nassgeodata.gmu.edu/CropScape/IL)
- ESRI World Imagery (https://www.arcgis.com/home/item.html?id=10df2279f9684e4a9f6a7f08febac2a9)
