Phylogenetic evidence of Paraphausis Green, 1949 as a junior synonym of Microphotus LeConte, 1866
Abstract
The firefly genus Paraphausis Green, 1949, is a monotypic genus often overlooked in taxonomic and phylogenetic studies. The relationship of Paraphausis within Lampyridae is uncertain. The primary reason for this uncertainty is reliance on morphological characters that lack utility in classification. The most recent hypothesis based on these morphological characters places Paraphausis within Microphotus LeConte, 1866. We aim to produce a hypothesis of classification for Paraphausis using an Anchored Hybrid Enrichment approach analyzing 510 genetic markers in a likelihood phylogenetic framework. We formally synonymize Paraphausis and Microphotus and move P. eximius to Microphotus eximius (Green, 1949) comb. nov. We provide updates to a generic and species key for Microphotus to include M. eximius. This reclassification strengthens our understanding of firefly phylogenetics and supports evolutionary insights within Lampyridae, contributing to an accurate taxonomy that is essential for conservation and further research.
Dataset DOI: 10.5061/dryad.nk98sf884
Description of the data and file structure
Data.zip contains the MAFFT alignments of Anchored Hybrid Enrichment (AHE) based DNA data in .fasta format broken up by locus. These are for firefly (Lampyridae) taxa with select outgroups. These are based on custom designed probes for Elateroidea (Coleoptera). Also with accompanying IQTree outputs from phylogenomic analyses.
INPUT files for IQTree
File: alignments
Folder including .fasta files. Each file is one locus
File: alignments.bionj
Neighbor joining starting tree in newick format
File: iqtree.slurm
Command line script with parameters used to initiate this analysis. note input directory and naming conventions will need to be updated by user for local execution
OUTPUT files
File: alignments (1).treefile
File containing phylogenetic topology output from IQTREE
File: alignments.ckp.gz
Checkpoint file for generation of UFBoot values
File: alignments.contree
Consensus tree in Newick format
File: alignments.iqtree
Output summary from IQtree
File: alignments.log
Log file for IQtree run
File: alignments.mldist
Maximum likelihood distance matrix generated by IQtree
File: alignments.splits.nex
Naming block and estimated partitions in nexus format from IQtree
File: alignments.zip
zipped folder containing all original alignments combined
File: alignments.treefile.pdf
Final tree in pdf format
Code/software
N/A
Access information
Other publicly accessible locations of the data:
- none
Data was derived from the following sources:
- newly published
