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Phylogenomic and divergence time data for 81 vespid species and four apid outgroups: Concatenated matrices, partitions, phylogenetic trees, and chronograms

Zheng, Wei1; Dai, Ming1; Carpenter, James M.2; Luo, Li1; Chen, Bin1; He, Shulin1; Li, Tingjing1

Published Sep 14, 2026 on Dryad. https://doi.org/10.5061/dryad.ns1rn8q7w

Data files

Sep 14, 2026 version files 282.80 MB

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Abstract

This dataset comprises phylogenomic analysis files for 85 species of Hymenoptera, including 81 species of Vespidae and four outgroup species of Apidae. The data include amino acid sequence matrices (USCOs), ultraconserved element (UCE) datasets, partition files, phylogenetic trees, and time-calibrated trees used for phylogenomic and divergence time analyses. Single-copy nuclear orthologs (USCOs) were extracted from genome and transcriptome assemblies, and UCEs were extracted from genome assemblies. All files are provided in standard formats (.fasta, .nexus, .phy, .tre) to facilitate reuse in comparative phylogenomic, evolutionary, and taxonomic studies of aculeate Hymenoptera. The dataset is associated with a manuscript on the phylogenomics and divergence time estimation of Vespidae. No sensitive data are included; the data are released under CC0 to maximize reuse potential.