Data from: Evolutionary imprints on the foliar elementome: Biogeochemical niche differentiation among Fagus species
Data files
Sep 07, 2026 version files 330.98 KB
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fagusdata_complete.csv
324.80 KB
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README.md
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Abstract
This dataset compiles previously published information on three Fagus species widely distributed across the Northern Hemisphere: Fagus grandifolia from North America (n = 399), Fagus sylvatica from Central Europe (n = 1610), and Fagus crenata from Japan (n = 17). The dataset integrates geographic coordinates, elevation, and climatic variables for each sampling site, including mean annual temperature (MAT) and mean annual precipitation (MAP) from WorldClim. It also brings together foliar concentrations of major nutrients (N, P, K) and secondary nutrients (Ca, Mg, S), along with the corresponding canonical scores derived from the statistical analyses. Each observation includes a specific reference to the source, either an individual study or a digital repository, providing a standardized, comparable resource for research on the ecology, biogeochemistry, and biogeography of Fagus species.
Dataset Description
This dataset compiles previously published information for three Fagus species widely distributed across the Northern Hemisphere:
- Fagus grandifolia (North America, n = 399)
- Fagus sylvatica (Central Europe, n = 1606)
- Fagus crenata (Japan, n = 17)
The dataset includes:
- Geographic coordinates (latitude, longitude)
- Elevation of each sampling site
- Climatic variables:
- Mean Annual Temperature (MAT)
- Mean Annual Precipitation (MAP)
(extracted from WorldClim)
- Foliar nutrient concentrations:
- Major nutrients: N, P, K
- Secondary nutrients: Ca, Mg, S
- Canonical scores (PC1, PC2, PC3) derived from corresponding statistical analyses
- Cells without data or values are indicated as
n/a.
File: fagusdata_complete.csv
File Structure
Each row represents one sampling site or observation and includes:
- Taxonomic information
- Site of origin
- Environmental variables
- Nutrient concentrations
- Principal component scores
Variables:
- species_code = Species abbreviation, (FC = Fagus crenata, FG= Fagus grandifolia, FS= Fagus sylvatica).
- species = species name
- Genus, spec – Taxonomic information separately.
- Source = Source where data were collected (search, repository, person in chagre of the information, experimental site)
- References = citation of related publications, repositories, experiments, personal communication
- site_Source = Prefecture locality/region/study site where data were collected
- country = correspondent country
- site_unique = Site identifier per scource
- Lat, long – Geographic coordinates (decimal degrees).
- MAT, MAP – Mean annual temperature (°C) and precipitation (mm).
- Elev – Elevation (m).
- N%, P%, K%, Ca%, Mg%, S% – Foliar nutrient concentrations (%).
- PC1, PC2, PC3 – Ordination or PCA scores derived from nutrient variables.
Data Sources
Each observation is linked to its original source, including published studies and digital repositories. Values were extracted from published studies and digital repositories. The foliar data used for the F. sylvatica in Central Europe mainly from ICP Forest repository (ICP Forest, 2022). Data for F. grandifolia from the USA populations was obtained from the Fahey et al. (2022) dataset in EDI Data Portal. Relevant data for F. crenata from Japan relied upon contributions from the Forestry and Forest Products Research Institute (FFPRI) in Japan (J. Nagakura and Kazuki Nanko, personal communication).
Climate variables (MAT, MAP) were obtained from WorldClim using the reported coordinates.
References
List of manuscripts and resources used to extract foliar data.
Amores, G., Bermejo, R., Elustondo, D., Lasheras, E., & Santamaría, J. M. (2006). Nutritional status of Northern Spain beech forests. Water, Air, and Soil Pollution, 177, 227–238.
Battles, J., Cleavitt, N., Johnson, C., Hamburg, S., Fahey, T., Driscoll, C., & Likens, G. (2017). Forest Inventory of a Northern Hardwood Forest: Watershed 6, 2017, Hubbard Brook Experimental Forest.
Bauer, G., Schulze, E. D., & Mund, M. (1997). Nutrient contents and concentrations in relation to growth of Picea abies and Fagus sylvatica along a European transect. Tree Physiology,17(12), 777–786.
Bussotti, F., Borghini, F., Celesti, C., Leonzio, C., & Bruschi, P. (2000). Leaf morphology and macronutrients in broadleaved trees in central Italy. Trees - Structure and Function, 14(7), 361–368.
Bussotti, F., Pancrazi, M., Matteucci, G., & Gerosa, G. (2005). Leaf morphology and chemistry in Fagus sylvatica (beech) trees as affected by site factors and ozone: Results from CONECOFOR permanent monitoring plots in Italy. Tree Physiology, 25(2), 211–219.
Gracia, C., Ibàñez, J. J., Burriel, J. A., Mata, T., & Vayreda, J. (2000–2004). Inventari Ecològic i Forestal de Catalunya (IFC). Centre de Recerca Ecològica i Aplicacions Forestals (CREAF), Bellaterra, Spain.
Hong, S. D., Gonzales, K. E., See, C. R., & Yanai, R. D. (2021). MELNHE: Foliar Chemistry 2008–2016 in Bartlett, Hubbard Brook, and Jeffers Brook (12 stands) ver 1. Environmental Data Initiative.
ICP Forests. (2022). ICP Forest - Level II- open dataset. (https://icp-forests.org/open_data) - download date: August 2022.
Jonard, M., André, F., Dambrine, E., Ponette, Q., and Ulrich, E. (2009). Temporal trends in the foliar nutritional status of the French, Walloon and Luxembourg broad-leaved plots of forest monitoring. Annals of forest science, 66(4), 412-412.
Jose, S., and Gillespie, A. R. (1996). Aboveground production efficiency and canopy nutrient contents of mixed-hardwood forest communities along a moisture gradient in the central United States. Canadian Journal of Forest Research, 26(12), 2214-2223.
Kattge, J., Bönisch, G., Díaz, S., Lavorel, S., Prentice, I. C., Leadley, P., Tautenhahn, S., Werner, G. D. A., et al. (2020). TRY plant trait database – enhanced coverage and open access. Global Change Biology, 26(1), 119–188.
Maňkovská, B., Godzik, B., Badea, O., Shparyk, Y., & 247 Moravčík, P. (2004). Chemical and morphological characteristics of key tree species of the Carpathian Mountains. Environmental Pollution, 130(1), 41–54.
Santamarìa, J. M., & Martfn, A. (1998). Influence of Air Pollution on The Nutritional Status of Navarra’s Forests, Spain. Chemosphere, 36(4), 943–948.
Sariyildiz, T., and Anderson, J. M. (2005). Variation in the chemical composition of green leaves and leaf litters from three deciduous tree species growing on different soil types. Forest Ecology and Management, 210, 303–319.
Yang, Y., Yanai, R. D., Fatemi, F. R., Levine, C. R., Lilly, P. J., Briggs, R. D., Britt, B. (2016). Sources of variability in tissue chemistry in northern hardwood species 1. Can. J. For
Intended Use
This dataset provides a standardized and comparable resource for research in ecology, biogeochemistry, and biogeography of Fagus species.
