Data from: The genomic basis of plumage polymorphism in the Eastern Screech-Owl (Megascops asio)
Data files
Jul 02, 2025 version files 1.24 GB
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Masio_pseudohap2.1.fasta
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README.md
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Abstract
Understanding the genetic basis of polymorphic traits is useful for exploring the origin and maintenance of variable phenotypes. Previous work on color polymorphism in birds has evolved from targeting candidate genes to whole genome scans, consequently revealing the often-complex genomic architecture underlying polymorphic coloration. The Eastern Screech-Owl (Megascops asio) is a small North American polymorphic forest owl in which both gray and rufous plumage morphs are common across much of its range. We used whole-genome resequencing to investigate the genomic basis of this polymorphic trait at a population level, revealing additive and epistatic sources of this color and pattern variation. Using three approaches, comparisons identified a genome-wide suite of loci known to be associated with coloration, several loci associated with non-coloration physiological pathways, and using a regression model-based approach, identified substantial epistatic interactions between loci underlying variation in screech-owl coloration. Many owl species show similar patterns of color polymorphism, which is likely mediated through parallel and equally complex genomic architecture that may partly explain how this trait has been maintained over evolutionary time as this group radiated.
Dataset DOI: 10.5061/dryad.qjq2bvqqw
Robinson, B. W., S. Kurtis, B. G. Butcher, S. V. Edwards, I. J. Lovette, and J. Walsh. The genomic basis to plumage polymorphism in the Eastern Screech-Owl (Megascops asio).
Author details:
Corresponding author: Bryce W. Robinson - bwr46@cornell.edu, ORCID 0000-0003-1422-8842
Our study investigates the genomic basis of plumage polymorphism in the Eastern Screech-Owl (Megascops asio) through comparisons using Fst, and quantified plumage in two ways to assess associations between continuous plumage variation and genomic variation using GWAS. We also investigated outlier regions in both analyses for candidate genes, assessed instances of additive or epistatic relationships between these candidate genes, and tested for patterns of selection.
All authors are responsible for the data collection. Bryce W. Robinson, Jen Walsh, and Sarah Kurtis wrote or adapted the code.
Data Description
All feather patch photos are available on Dryad. File names are structured as a first letter that indicates that individual's morph (G or R), followed by the catalog number, then the location and file size (mantle, 400 pixels).
The reference .fasta is also available on Dryad (Masio_pseudohap2.1.fasta). All genome sequences are available on NCBI.
BWR ran following code under:
R version 4.2.2 (2022-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS 14.4.1
All R code can be found in the separate R file on Dryad - Robinson_EASO_Rcode.R
Reference genome assembly scripts can be found at https://github.com/skurtis/Screech-owl-reference-genome-assembly
scripts can be found at https://github.com/jenwalshemond/EASO_Scripts and https://github.com/bwr46/megascops/bash_scripts
