Evaluation of models of enteric methane emissions in finishing steers
Data files
May 19, 2025 version files 1.03 MB
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Database_models_animal.csv
54.73 KB
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Fig_1_Met_pred.tif
652.36 KB
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Fig_2_Met_pred.tiff
159.08 KB
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Model_evaluation_syntaxis_animal.txt
2.09 KB
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README.md
2.41 KB
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Sup_T1_Met_Pre_Rev.pdf
163.25 KB
Sep 16, 2025 version files 1.04 MB
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Database_09-11-2025.csv
64.51 KB
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Fig_1_Met_pred.tif
652.36 KB
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Fig_2_Met_pred.tiff
159.08 KB
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Model_evaluation_syntaxis_animal.txt
2.09 KB
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README.md
2.58 KB
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Sup_T1_Met_Pre_Rev.pdf
163.25 KB
Feb 27, 2026 version files 1.06 MB
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Database_09-11-2025.csv
64.51 KB
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Fig_1_Met_pred.tif
652.36 KB
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Fig_2_Met_pred.tiff
159.08 KB
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metadata.docx
17.07 KB
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Model_evaluation_syntaxis_animal.txt
2.09 KB
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README.md
2.85 KB
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Sup_T1_Met_Pre_Rev.pdf
163.25 KB
Abstract
Accurate estimation of enteric CH4 emissions (i.e., MJ or g of CH4/ day) in the ruminant sector is necessary for properly determining GHG emissions and developing measuring, reporting, and verification programs. However, measuring enteric CH4 emissions under commercial conditions presents challenges due to technical and economic constraints. Thus, using prediction models allows for estimating individual enteric CH4 emissions according to animal and dietary characteristics. When evaluated in independent datasets, there is limited information regarding the accuracy and precision of the reported equations to predict enteric CH4 emissions in steers fed a finishing diet. This study evaluated the predictive performance of various reported equations for estimating enteric CH4 production in finishing steers. Data used to assess the prediction equations came from 446 steers from five experiments during the finishing phase. Gas flux, nutrient consumption, and animal growth performance were evaluated in each experiment. Seventy-two equations were compared based on the mean square prediction error (MSPE), the decomposition of the root MSPE (RMSPE), and the concordance correlation coefficient (CCC). Prediction equations for estimating enteric CH4 emissions showed lower sensitivity with RMSPE (as a percentage of the observed mean) ranging from 17.79 to 99.21 and CCC ranging from -0.07 to 0.21. The decomposition of the RMSPE showed mean bias (as a percentage of the RMSPE) ranging from 0.14 to 94.87 and slope bias (as a percentage of the RMSPE) ranging from 0 to 25.24. In addition, 49 equations underpredicted (ranging from 0.6 to 50.1%) and 23 overpredicted (ranging from 3.7 to 96.1%) enteric CH4 emissions. The prediction of enteric CH4 production showed greater CCC and lower MSPE when the intake of dry matter and ether extract were included as predictors. These results suggest a limited ability to predict enteric CH4 by steers during the finishing phase. Further efforts are required to generate sensitive models to accurately predict enteric CH4 emissions in finishing steers.
https://doi.org/10.5061/dryad.qnk98sfsn
Description of the data and file structure
Data are from 5 independent experiments with Bos taurus cattle fed an energy dense finishing diet. Emissions data were collected via Greenfeed units (C-Lock Inc, Rapid City, SD). Feed intake was collected from Smartfeed units (C-Lock Inc., Rapid City, SD). Feed composition data were determined via wet chemistry by Dairy One (Ithaca, NY).
File: Sup_T1_Met_Pre_Rev.pdf
Description: Table with models and references.
File: Fig_1_Met_pred.tif
Description: Figure with comparing Concordance Correlation Coefficient (CCC) and Root Mean Square Prediction Error (RMSPE) of evaluated models.
File: Fig_2_Met_pred.tiff
Description: Figure comparing proportion of evaluated models that under and over predicted methane emissions.
File: Database_09-11-2025.csv
Description: Independent dataset used for model evaluation
Variables
- Project: project code for each of the 5 independent experiments in the dataset
- Animal: unique animal id within the dataset
- Breed: breed type of the animal
- ADG_Fin: average daily gain in kg
- SMBW_Fin: Shrunk mid body weight in kg
- DMI_Fin: dry matter intake in kg
- CO2_Fin: carbon dioxide emissions in g per day
- CH4_Fin: methane emissions in g per day
- CH4_MJ_Fin: enteric methane emissions in MJ per day
- O2_Fin: oxygen consumption in g per day
- CP_%: crude protein percentage in the diet
- NDF_%: neutral detergent fiber percentage in the diet
- Hem_%: hemicellulose percentage in the diet
- ADF_%: acid detergent fiber percentage in the diet
- Lig_%: Lignin percentage in the diet
- Cel_%: Cellulose percentage in the diet
- NFC_%: Non-fiber carbohydrates percentage in the diet
- Sta_%: Starch percentage in the diet
- EE_%: Ether extract percentage in the diet
- Ash_%: Ash percentage in the diet
- Forage_%: Forage percentage in the diet
- TDN_%: total digestible nutrients percentage in the diet
- NEm_Mcalkg: net energy for maintenance density in the diet in Mcal per kg of dry matter
- NEg_Mcalkg: net energy for gain density in the diet in Mcal per kg of dry matter
- GE_Mcalkg: gross energy density in the diet in Mcal per kg of dry matter
File: metadata.docx
Description: A copy of this README
Code/software
R code script and needed packages are provided in Model_evaluation_syntaxis_animal.txt.
Version changes
16-sept-2025: updated data in Database_09-11-2025.csv for data from project 2024A, due to a GreenFeed data processing error by C-Lock, Inc.
24-feb-2026: separate metadata file metadata.docx with README information added. In variable list, CH4_MJ_Fin variable description has been added
Changes after May 19, 2025: updated data in Database_09-11-2025.csv for data from project 2024A, due to a GreenFeed data processing error by C-Lock, Inc.
Changes after Sep 16, 2025: Added README information into a metadata.docx file. Added information on variable CH4_MJ_Fin to README information.
