Data from: A case study of grassland responses to fuel reduction treatment on the mount Hamilton range of California
Data files
Feb 11, 2026 version files 250.40 KB
-
Community_matrix_2024.csv
65.13 KB
-
Plot_summaries_2024.csv
177.98 KB
-
README.md
7.30 KB
Abstract
In many grasslands, mowing and grazing are common management methods that can decrease fuel loads and alter community composition to achieve specific targets, such as increasing diversity or reducing grass dominance. Communities may respond with changes in their taxonomic, phylogenetic, and functional diversity, species turnover, functional shifts, and individualistic species responses. We address these in a 4-yr case study of grazing and mowing in a California grassland located in the Mount Hamilton Range of Santa Clara County. We hypothesize that both grazing and mowing will reduce grass cover and residual dry matter, allowing competitive release of a more diverse range of forbs, likely increasing functional and phylogenetic diversity. On the other hand, these treatments may impose filters on the community (e.g., mowing may eliminate tall species), reducing functional diversity and shifting the community towards particular functional compositions.
In contrast to our expectations, grass cover did not respond strongly to either treatment, and there were weak effects on residual dry matter. However, there were still strong compositional responses. Mowing led to a reduction in tall, large-seeded, and perennial species and generally higher functional and phylogenetic diversity. The most pronounced response in grazed communities was a marked increase in nitrogen-fixing species, paired with reductions in functional and phylogenetic diversity. Similar results have been observed in previous studies of grazing and mowing impacts at other Californiagrasslands sites, providing a basis for predicting species responses to these treatments. Both can be useful tools to filter the community for particular species compositions, but showed no benefit for commonly used restoration targets such as increasing species richness or native cover. Continued monitoring of the sites will track potentially slow compositional changes and investigate the interactions between treatments and interannual weather variation.
Dataset DOI: 10.5061/dryad.qrfj6q5vb
Description of the data and file structure
These are 1x1 m vegetation plots collected in May of 2021-2024 from Blue Oak Ranch Reserve (part of the University of California natural reserve system). We identified all plant species growing in each plot and estimated their percent cover.
Plots were organized along transects within sites (four plots per transect). Two of the sites were located in mowed areas, two in areas grazed by cattle and two in control areas with neither treatment. Each of these had three transects. Additionally, one site (with four transects) was treated with herbicides, grazing and mowing.
The Community matrix file contains row names specifying the sampling event (transect number, plot identifier along the transect, year of sampling), then one column for each species identified. Taxonomy follows the Jepson Manual.
The Plot summaries file provides information on each plot in each year, including its transect number, plot identifier, year, and a text string describing the site name. The plot coordinates are given by Lat and Long, and the treatment by Treatment.
Other columns contain computed summaries of the community in each plot. These are:
shannon: The Shannon diversity of the plot
richness: The species richness of the plot
grass.cover: summed relative abundance of grasses
native.cover: summed relative abundance of native species
nfix.cover: summed relative abundance of nitrogen-fixing species
perennial.cover: summed relative abundance of perennial species
MeanSLA: the geometric mean of SLA of species in the plot, weighted by their relative abundance (m2/kg)
MeanHeight, MeanSeed, MeanRootDepth, MeanThick, MeanArea, MeanLDMC, MeanNmass, MeanPmass, MeanSRL: As above but for height (m), seed mass (mg), maximum rooting depth (m), leaf thickness (mm), single leaf area (mm2), leaf dry matter content (proportion), leaf nitrogen concentration (mg/g), leaf phosphorous concentration (mg/g) and specific root length (m/g)
FEve, FDiv, FDis, RaoQ: Measures of functional diversity (functional evenness, functional diversity, functional dispersion and Rao's quadratic entropy. These are based on three traits: SLA, height and seed mass.
MPD, MPDSES, MNTD, MNTDSES, PD, PDSES: Measures of phylogenetic diversity or structure. MPD is the mean pairwise distance between species on the tree, MNTD is the mean nearest neighbor distance and PD is the total branch length of the minimum spanning tree for the community (Faith's PD). SES versions of each metric are richness-standardized.
Files and variables
File: Plot_summaries_2024.csv
Description:
Variables
- Transect: Transect identifier (ranges from 1 to 22)
- Plot: Plot identifier along each transect (ranges from A to D)
- Year: Year of sampling (2021-2024)
- Site: Text describing the sampling area. Transects from the same site are nearby.
- shannon: Shannon diversity index of the plot
- richness: Species richness of the plot
- grass.cover: Proportional cover by grasses
- native.cover: Proportional cover by native species
- nfix.cover: Proportional cover by nitrogen-fixing species
- perennial.cover: Proportional cover by perennial species
- Lat: Latitude (in decimal degrees)
- Long: Longitude (in decimal degrees)
- Treatment: Treatment received by the plot
- MeanSLA: The geometric mean of SLA of species occurring in a plot, weighted by abundance (m2/kg)
- MeanHeight: As above, but for height (m)
- MeanSeed: As above but for seed mass (mg)
- MeanRootDepth: As above but for maximum rooting depth (m)
- MeanThick: As above but for leaf thickness (mm)
- MeanArea: As above but for single leaf area (mm2)
- MeanLDMC: As above but for leaf dry matter content (proportion)
- MeanNmass: As above but for leaf nitrogen content (mg/g)
- MeanPmass: As above but for leaf phosphorous content (mg/g)
- MeanSRL: As above but for specific root length (m/g)
- FEve: Functional evenness of the community (based on SLA, height and seed mass)
- FDiv: Functional diversity of the community (based on SLA, height and seed mass)
- FDis: Functional dispersion of the community (based on SLA, height and seed mass)
- RaoQ: Rao's quadratic entropy of the community (based on SLA, height and seed mass)
- MPD: Mean pairwise distance along the phylogeny among all species in the plot
- MPDSES: MPD standardized against species richness
- MNTD: Mean nearest neighbor distance along the phylogeny among all species in the plot
- MNTDSES: MNTD standardized against species richness
- PD: Faith's PD for the plot
- PDSES: PD standardized against species richness
File: Community_matrix_2024.csv
Description:
Variables
- Rownames specifying the transect number, plot ID and year.
- Achillea millefolium: for all species: percent cover of that species
- Acmispon wrangelianus
- Agoseris grandiflora
- Agoseris heterophyla
- Aira caryophyllea
- Amsinckia menziesii
- Anagallis arvensis
- Astragalus gambelianus
- Avena barbata
- Avena fatua
- Briza minor
- Bromus carinatus
- Bromus diandrus
- Bromus hordeaceus
- Bromus laevipes
- Bromus madritensis
- Calystegia collina
- Carduus pycnocephalus
- Castileja attenuata
- Centaurea melitensis
- Cerastium glomeratum
- Chlorogalum pomeridianum
- Cirsium vulgare
- Clarkia purpurea
- Crepis capillaris
- Cynosurus echinatus
- Daucus pusillus
- Dichelostemma capitatum
- Elymus glaucus
- Elymus triticoides
- Erodium botrys
- Erodium cicutarium
- Erythranthe microphylla
- Festuca perennis
- Galium aparine
- Geranium dissectum
- Geranium molle
- Hordeum marinum
- Hypochaeris glabra
- Hypochaeris radicata
- Lactuca seriola
- Linum bienne
- Logfia gallica
- Lupinus bicolor
- Lupinus sp.
- Madia gracilis
- Medicago polymorpha
- Melica californica
- Microseris douglasii
- Plagiobothrys nothofulvus
- Rumex acetosella
- Rumex crispus
- Sanicula bipinnatifida
- Scandix pecten-veneris
- Sidalcea malviflora
- Sisyrinchium bellum
- Sonchus asper
- Stipa pulchra
- Taeniatherum caput-medusae
- Taraxacum officinalis
- Thysanocarpus curvipes
- Torilis arvensis
- Trifolium albopurpureum
- Trifolium bifidum
- Trifolium dubium
- Trifolium glomeratum
- Trifolium hirtum
- Trifolium microcephalum
- Trifolium microdon
- Trifolium repens:
- Trifolium sp.
- Trifolium subterraneum
- Trifolium willdenovii
- Triphysaria pusilla
- Triteleia laxa
- Tropidocarpum gracile
- Unknown
- Vicia sativa
- Vicia villosa
- Viola pedunculata
- Vulpia myuros
- Wyethia angustifolia
Code/software
No special software is needed, but we performed all analysis in R.
Access information
Data was derived from the following sources:
- Plant trait data originated in part from the TRY plant trait database: Kattge, J., Bönisch, G., Díaz, S., Lavorel, S., Prentice, I. C., Leadley, P., Tautenhahn, S., & Werner, G. (2020). TRY plant trait database - enhanced coverage and open access. Global Change Biology, 26(1), 119-188
- The phylogeny was produced using V.PhyloMaker2: Jin, Y. and H. Qian. 2022. V. PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants. Plant Diversity 44: 335-339.
These data are from grassland vegetation surveys at Blue Oak Ranch Reserve, in the Mount Hamilton Range of Santa Clara County, California. We surveyed seven sites in the spring of 2021-2024. Each site had 3 (or, in one case, 4) transects, with 4 1x1 m sampling plots every 10m along each transect. Within each plot, we estimated the percent cover of each vascular plant.
In addition to the resulting community matrix, we also provide a variety of plot-level summaries of the communities. These include species diversity, functional diversity, phylogenetic diversity, and functional structure.
