Neurocranial narrowness across nonhuman anthropoid primates
Data files
Feb 28, 2026 version files 185.56 KB
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brainweights.csv
1.63 KB
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EQ_analysis.Rmd
2.86 KB
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pANCOVA_f.Rmd
19.02 KB
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pANCOVA_m.Rmd
16.61 KB
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pgls.Rmd
19.77 KB
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qualaveragesfemale.csv
2.60 KB
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qualaveragesmale.csv
2.51 KB
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rawdata.csv
50.04 KB
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README.md
6.59 KB
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univariate_f.Rmd
33.01 KB
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univariate_m.Rmd
30.91 KB
Abstract
Body size allometry has been proposed to explain neurocranial shape variation across platyrrhine monkeys, including the extreme neurocranial narrowness (NCN) of small-bodied taxa. However, catarrhine primates do not align with the proposed platyrrhine allometry, suggesting that body size alone may not explain anthropoid NCN variation. We measured NCN in platyrrhine and catarrhine anthropoids, and identified inter-clade differences in degree and allometric scaling of NCN using GLS pANCOVA, a method combining generalized least squares analysis and phylogenetic analysis of covariance. We further performed character history analysis using extant anthropoid data and fossil evidence to estimate neurocranial shape in anthropoid ancestors. We found no unified allometry of NCN across platyrrhines or across anthropoids as a whole, and there was no significant correlation between body mass and NCN across platyrrhines or catarrhines. At the subfamily level, callitrichine and possibly cebine platyrrhines differ from other anthropoids in degree and allometric scaling of NCN. Character history analysis suggests that higher NCN is the ancestral platyrrhine condition, and broader neurocranial shape evolved independently in catarrhines and larger-bodied platyrrhines. Our results support the hypothesis that body size does not explain anthropoid NCN variation, and provide a foundation for future research into potential correlates of anthropoid NCN.
Dataset DOI: 10.5061/dryad.r4xgxd2r0
Description of the data and file structure
The dataset contains a complete list of skeletal specimens with the linear measurement values used to calculate neurocranial narrowness (NCN), as well as annotated R code to replicate phylogenetic analyses of covariance and generalized least squares analyses (GLS pANCOVA). GLS pANCOVA identifies species or clades that deviate from expected neurocranial shape allometry. R code is also included for performing linear regression of brain weight residuals and neurocranial narrowness values.
Code/software
The .Rmd files were compiled in RStudio for R version 4.3.3, and require the evomap package (Smaers, J.B., and F.J. Rohlf. 2016. "Testing species’ deviations from allometric predictions using the phylogenetic regression." Evolution 70: 1145-1149).
The phylogenetic tree referenced in the R code is available through the 10kTrees Project (Arnold C., L. J. Matthews, and C. L. Nunn. 2010. "The 10kTrees Website: A New Online Resource for Primate Phylogeny." Evolutionary Anthropology 19: 114-118).
- To download evomap for R: https://smaerslab.com/software/
- The 10kTrees Project: https://10ktrees.nunn-lab.org/Primates/index.html
Files and variables
File: qualaveragesfemale.csv
Description: Species-average neurocranial narrowness values for female specimens, formatted for use in the attached R code. These values were derived from caliper measurements of skeletal specimens from the Smithsonian National Museum of Natural History and Harvard Museum of Comparative Zoology; a complete accounting of specimens can be found in the rawdata.csv file.
Variables
- Genus. Genus and species, formatted to match phylogenetic tree labels used in the
- Weight. Species-average body mass in kilograms (kg), per Smith and Jungers (1997).
- NCN. Species-average neurocranial narrowness, calculated as NCL divided by NCB.
- NCL. Species-average neurocranial length in millimeters (mm), measured from glabella to lambda.
- NCB. Species-average neurocranial breadth (mm), measured as biparietal breadth from euryon to euryon.
File: pANCOVA_f.Rmd
Description: Annotated R Markdown code for performing a phylogenetic ANCOVA to identify deviations from expected allometry of neurocranial narrowness. This analysis includes only female specimens, and requires importing the qualaveragesfemale.csv file.
File: qualaveragesmale.csv
Description: Species-average neurocranial narrowness values for male specimens, formatted for use in the attached R code. As above, these values were derived from caliper measurements of skeletal specimens from the Smithsonian National Museum of Natural History and Harvard Museum of Comparative Zoology; a complete accounting of specimens can be found in the rawdata.csv file.
Variables
- Genus. Genus and species, formatted to match tree tip labels.
- Weight. Species-average body mass in kilograms (kg), per Smith and Jungers (1997).
- NCN. Species-average neurocranial narrowness, calculated as NCL divided by NCB.
- NCL. Species-average neurocranial length in millimeters (mm), measured from glabella to lambda.
- NCB. Species-average neurocranial breadth (mm), measured as biparietal breadth from euryon to euryon.
File: pANCOVA_m.Rmd
Description: Annotated R Markdown code for performing a phylogenetic ANCOVA to identify deviations from expected allometry of neurocranial narrowness. This analysis includes only male specimens, and requires importing the qualaveragesmale.csv file.
File: pgls.Rmd
Description: Annotated R Markdown code for performing a phylogenetic generalized least squares analysis of neurocranial narrowness allometry across anthropoids. Requires importing both qualaveragesfemale.csv and qualaveragesmale.csv.
File: univariate_f.Rmd
Description: Annotated R Markdown code for univariate phylogenetic ANCOVA of neurocranial length and breadth, where each variable is analyzed individually. Includes only female specimens, and requires importing the qualaveragesfemale.csv file.
File: univariate_m.Rmd
Description: Annotated R Markdown code for univariate phylogenetic ANCOVA of neurocranial length and breadth, where each variable is analyzed individually. Includes only male specimens, and requires importing the qualaveragesmale.csv file.
File: brainweights.csv
Description: Species-average brain weight, body weight, and neurocranial narrowness values.
Variables
- Species. Genus and species.
- Brainweight. Species-average brain weight in kilograms (kg), derived from Stephan (1981) and Boddy et al. (2012).
- Bodyweight. The median value between species-average male and species-average female body mass (kg), per Smith and Jungers (1997).
- M. Species-average male body mass (kg).
- F. Species-average female body mass (kg).
- NCN. Species-average neurocranial narrowness, calculated as neurocranial length divided by neurocranial breadth.
- EQ. Encephalization quotient, calculated as per Jerison (1973).
File: EQ_analysis.Rmd
Description: Annotated R Markdown code for linear regressions of brain weight residuals and neurocranial narrowness. Requires importing the brainweights.csv file.
File: rawdata.csv
Description: Original list of specimens with taxonomic information and linear measurements, as well as body mass (where available) and notes on methods and preservation.
Variables
- Call num. Specimen's museum call number, where "USNM" refers to the Smithsonian National Museum of Natural History and "MCZ" the Harvard Museum of Comparative Zoology.
- Sex. Male (M), female (F), or unknown (?).
- Genus / sp. Genus, species, and (when available) subspecies of each specimen.
- Recorded weight (kg). Museum data for some specimens included the weight of the individual in kilograms. This column is left blank for specimens without recorded weights.
- Cranial length (mm). Cranial length from glabella to lambda, in millimeters.
- Cranial breadth (mm). Cranial breadth from euryon to euryon, in millimeters.
- CL/CB (NCN). Neurocranial narrowness, calculated as cranial length divided by cranial breadth.
