Warming and reduced rainfall alter fungal necromass decomposition rates and associated microbial community composition and functioning at a temperate-boreal forest ecotone
Data files
Oct 03, 2025 version files 52.53 MB
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16S_combined_sequences_taxa_silva.txt
26.49 MB
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B4W_Bio_Loss.csv
2.06 KB
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B4W_Climate_2023.csv
13.99 MB
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B4W_Necro_MassLoss.csv
18.22 KB
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B4W_Times.csv
6.96 KB
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Bacteria_RA.csv
559.38 KB
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BacteriaLogCopies.csv
2.36 KB
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Fungi_RA.csv
416.82 KB
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FungiLogCopies.csv
2.36 KB
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ITS_combined_sequences_taxa.txt
11.03 MB
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README.md
7.86 KB
Abstract
Changes in temperature and rainfall associated with altered climatic conditions are likely to significantly alter rates of soil organic matter decomposition. To determine how the combined effects of warming and drought impact the decomposition of fungal necromass, a large and fast-cycling portion of the global soil organic carbon (C) pool, we incubated Hyaloscypha bicolor necromass under both ambient and altered conditions (air and soil warming +3.3°C and ~40% reduced rainfall) at the B4Warmed experiment in Minnesota, USA. We conducted two multi-week incubations, one assessing mass loss and microbial community composition on decaying necromass after 1, 2, 7, and 14 weeks and the second characterizing the substrate utilization capacities of necromass-associated microbial communities after weeks 1 and 7. Warming and reduced rainfall accelerated the initial rate of necromass decay by ~20%, yet slowed overall mass loss by ~6% at the end of the 14 week incubation. These different rates of decay over time paralleled shifting abiotic conditions, with altered plots experiencing warmer and relatively moist conditions early, but hotter and drier conditions later. The microbial community composition also varied by treatment and time, with warming and reduced rainfall stimulating fast-growing fungi as well as fungal relative to bacterial growth overall. Additionally, the functional capacity of the microbial community also changed over time, having a higher metabolic capability to utilize C and N substrates in the altered plots early in decomposition but a lower capability later in decay. Collectively, our findings highlight a dynamic, stage-dependent response of fungal necromass decomposition to altered climate regimes. By linking these decay dynamics to shifts in environmental conditions as well as microbial community composition and function, our study highlights the critical roles of both abiotic and biotic changes in mediating decomposition responses to climate change.
Dataset DOI: 10.5061/dryad.rn8pk0pp6
Description of the data and file structure
This data was collected to determine the impact that experimental warming and reduced rainfall has on decomposing fungal necromass in a temperate-boreal ecotone. We incubated fungal necromass and determined mass loss across time (1, 2, 7, and 14 weeks), sequenced the associated bacterial and fungal communities, and assessed microbial substrate utilization using biolog eco plates.
Files and variables
File: B4W_Necro_MassLoss.csv
Description: Mass loss measurements for the 14-week incubation. Missing values are labeled as NA.
Variables
- Plot : Plot ID based on 3 different blocks.
- Plot_ID: The ID of the bag tags.
- set: Respective set associated with each group of bags.
- Treatment: Treatment type.
- Harvest_date: Date of harvest
- Harvest_time: Time frame of harvest
- Day: Time necromass was incubated in days
- Year: Time necromass was incubated in years
- Mass_intial: Initial necromass mass deployed (in grams)
- Mass_initial_per: Initial necromass deployed as a percentage
- Mass_tube: The mass (in grams) of a clean and sterile microcentrifuge tube
- Mass_tube_wet: The mass of the micro centrifuge tube with necromass harvested (before freeze drying)
- Mass_harvest_wet: The mass of the necromass only (before freeze drying)
- Mass_tube_dry: The mass of the micro centrifuge tube with necromass after freeze drying
- Mass_harvest_dry: The mass of the necromass only after freeze drying
- Ratio: The wet to dry ratio (mass_harvest_wet/mass_harvest_dry)
- Mass_prop_rem: Mass proportion remaining after incubation
- Mass_prop_rem_per: Mass proportion remaning percentage
- Mass_lost : Total mass lost
- Mass_prop_lost: Mass proportion lost
- Mass_prop_lost_per: Mass proportion lost percentage
- B4W_coordinates: coordinate of where each bag was deployed
File: 16S_combined_sequences_taxa_silva.txt
Description: Bacterial (16S rRNA) sequences from necromass bags and adjacent soil.
File: ITS_combined_sequences_taxa.txt
Description: Fungal (ITS) sequences from necromass bags and adjacent soil.
File: B4W_Bio_Loss.csv
Description: Mass loss measurements for the 7-week incubation. Missing values are blank.
Variables
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Plot_ID: Plot location
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Tag_ID: Tag of bag
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Treatment: Treatment type
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B4W_coordinates: coordinate of where each bag was deployed
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Harvest_date: Date of harvest
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Day: Time necromass was incubated in days
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Year: Time necromass was incubated in yearsMass_intial: Initial necromass mass deployed (in grams)
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Mass_initial_per: Initial necromass deployed as a percentage
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Mass_tube: The mass (in grams) of a clean and sterile microcentrifuge tube
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Mass_tube_wet: The mass of the micro centrifuge tube with necromass harvested (before freeze drying)
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Mass_harvest_wet: The mass of the necromass only (before freeze drying)
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Mass_tube_dry: The mass of the micro centrifuge tube with necromass after freeze drying
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Mass_harvest_dry: The mass of the necromass only after freeze drying
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Ratio: The wet to dry ratio (mass_harvest_wet/mass_harvest_dry)
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Mass_prop_rem: Mass proportion remaining after incubation
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Mass_prop_rem_per: Mass proportion remaning percentage
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Mass_lost : Total mass lost
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Mass_prop_lost: Mass proportion lost
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Mass_prop_lost_per: Mass proportion lost percentage
File: B4W_Climate_2023.csv
Description: Temperature and precipitation measurement summaries for the dates this experiment was deployed.
Variables
- date: date of measurement
- time: time of measurement
- AM_PM: morning or afternoon of measurement
- site: location site
- canopy: canopy type (open or closed)
- plot: plot id
- year: year of measurement
- month: month of the year
- week: week of the year
- hour: hour measurement number of the day
- block: block number
- warming_treatment: warming treatment
- water_treatment: water treatment
- power: power (on =1, off =0)
- AbovegroundTempC: Temperature aboveground (lamps)
- BelowgroundTempC: Temperature below ground (wires)
- relativeHumidity: relative humidity %
- VWC: Volumetric Water Content of the soil
File: FungiLogCopies.csv
Description: qPCR data from fungi (ITS) for 7-week incubation
Variables
- Number: Number of sample
- SampleID: Sample ID (Plot, Day, Replicate)
- Treatment: Treatment type
- Day: incubation days
- Replicate: Replicate or Biolog number
- AverageCt: average cycle threshold
- Copies: Fungal copies
- Copies_uLDNA: Fungal copies per uL used
- Copies_uLDNA_Diluted: Fungal copies per uL used diluted
- Copies_per_gram: uL of Fungal copies per gram of necromass used for DNA extraction
- LogCopies_per_gram: fungal copies (log transformed) per gram of necromass used for DNA extraction
File: BacteriaLogCopies.csv
Description: qPCR data from bacteria (16S rRNA) for 7-week incubation
Variables
- Number: Number of sample
- SampleID: Sample ID (Plot, Day, Replicate)
- Treatment: Treatment type
- Day: incubation days
- Replicate: Replicate or Biolog number
- AverageCt: average cycle threshold
- Copies: Bacterial rRNA copies
- Copies_uLDNA: Bacterial copies per uL of DNA added per reaction
- Copies_uLDNA_Diluted: Bacterial copies per uL of diluted DNA
- Copies_per_gram: bacterial copies per gram of necromass used for DNA extraction
- LogCopies_per_gram: bacterial copies (log transformed) per gram of necromass used for DNA extraction
File: Bacteria_RA.csv
Description: Processed Relative abundance data for bacterial ASVs that have been clustered by genus. The first column is the genus, and subsequent columns are the different samples. Refer to B4W_Times for sample ID details.
- Genus: Bacteria genera
File: Fungi_RA.csv
Description: Processed Relative abundance data for fungal ASVs that have been clustered by genus. The first column is the genus, and subsequent columns are the different samples. Refer to B4W_Times for sample ID details.
- Genus: Fungi genera
File: B4W_Times.csv
Description: Processed Relative abundance data for fungal ASVs that have been clustered by genus. The first column is the genus, and subsequent columns are the different samples. Refer to B4W_Times for sample ID details.
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SampleID: Sample names. Samples beginning with a capital S are soil samples.
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Day: how long necromass bags were incubated for. Initial soil samples are labeled as "0".
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TimeFrame: The associated time frames based on decay fractions; initial, k (days 7 and 14) and A (days 49 and 98).
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Treatment: The associated treatment types; altered (3.3C_redR) and ambient (ambC_ambR). Soil samples are labeled with "soil" at the beginning.
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Deployment: When samples were deployed. June is the longest incubation used to assess mass loss and community composition while the August deployment is the short incubation used to assess microbial activity. Initial refers to initial soil samples (no necromass or incubation)
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Harvest: Exaact dates for each harvest as month/day/year
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Block: The associated block name for each condition/treatment.
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Set: The associated "set" that was determined by each plot quadrant. Please refer to experimental layout for details
Code/software
All analyses and data visualization were conducted in R and R studio. Primary packages used were tidyverse, vegan, cowplot, bbmle, nortest, and other. Exact scripts used for this study can be found at GitHub: https://github.com/AnahiCantoran/B4Warmed_Necromass
