Bioenergetic modeling reveals opposing effects of ocean and terrestrial warming of an intertidal crustacean
Data files
Apr 22, 2025 version files 3.01 MB
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Field_environmental_intertidal_subtidal_temp_and_water_level.csv
2.96 MB
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Field_opercular_length_Aug_Mar.csv
11.17 KB
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Field_opercular_length_Feb_Aug.csv
13.46 KB
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Physiology_aerial_exposure_and_recovery_respiration_data_from_the_cost_of_emersion.csv
3.30 KB
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Physiology_aquatic_feeding_rates_FHL.csv
3.97 KB
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Physiology_aquatic_total_resp_FHL.csv
4.15 KB
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README.md
7.63 KB
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subtidal_growth_data_from_the_effect_of_water_temperature_and_velocity_on_barnacle_growth.csv
198 B
Abstract
Organism-level bioenergetics models (OBMs) are an emerging tool to predict organism-level consequences to dynamic temperature in field environments. Here we use an OBM to assess sensitivity to ocean and atmospheric warming for an intertidal barnacle, Balanus glandulus. We measure environmental conditions (aerial and aquatic temperature) at three intertidal heights over two 6-month intervals and compare observed growth to growth estimates based on a Numerical Scope for Growth model. This OBM integrates the effects of multiple thermal responses (e.g. feeding, respiration) in multiple contexts (aerial, aquatic).
Dataset DOI: 10.5061/dryad.s1rn8pkk1
Description of the data and file structure
Here we include field environmental data, field-measured biological data, an independent growth dataset, and physiology experimental data (aerial and aquatic respiration, aquatic feeding).
Files and variables
File: Field_environmental_intertidal_subtidal_temp_and_water_level.csv
Description: Rock temperatures of HOBOs deployed by Gordon Ober and Sarah Gilman at each elevation (Low, Mid, Upper). This is combined with NOAA tide data sourced from: National Buoy Data Center Station FRDW1 - 9449880, NOAA National Ocean Service. The raw data is also available on Zenodo as ~/data/environmental_data/TempAndWaterLevel_QC.20210401.csv
Variables
- datetime: Time and date
- Upper: Logger temperature in Celsius at the Upper elevation
- Mid: Logger temperature in Celsius at the Mid elevation
- Low: Logger temperature in Celsius at the Low elevation
- Water.Level: Tidal data (MLLW)
- Water.Temp: Water temperature in Celsius
File: Field_opercular_length_Feb_Aug.csv
Description: Barnacle size data used for February to August growth calculations. Contributors to this dataset include Gordon Ober, Emily Roberts, Sarah Gilman, Elizabeth Ueland, Sarah Ueland, Addie Gleekal, Sonia Malik, Katherine Roberts. The raw data is also available on Zenodo as ~/data/growth_data/Scaled_data_Feb_Aug.csv
Variables
- Row_num: Spreadsheet row number
- Elevation: Upper, Mid, or Low elevation
- Replicate_num: Photoquadrat number
- Start_month: Month the barnacle first appears in the dataset (Feb or Aug)
- Barnacle_ID: ID of each individual barnacle in the dataset
- Feb.Length: Opercular length in February collection timepoint (cm)
- Aug.Length: Opercular length in August collection timepoint (cm)
File: Field_opercular_length_Aug_Mar.csv
Description: Barnacle size data used for August to March growth calculations. Contributors to this dataset include Gordon Ober, Emily Roberts, Sarah Gilman, Elizabeth Ueland, Sarah Ueland, Addie Gleekal, Sonia Malik, Katherine Roberts. The raw data is also available on Zenodo as ~/data/growth_data/Scaled_data_Aug_Mar.csv
Variables
- Row_num: Spreadsheet row number
- Elevation: Upper, Mid, or Low elevation
- Replicate_num: Photoquadrat number
- Start_month: Month the barnacle first appears in the dataset (Feb or Aug)
- Barnacle ID: ID of each individual barnacle in the dataset
- Aug.Length: Opercular length in August collection timepoint (cm)
- Mar.Length: Opercular length in March collection timepoint (cm)
File: subtidal_growth_data_from_the_effect_of_water_temperature_and_velocity_on_barnacle_growth.csv
Description: This subtidal growth data was measured by Elizabeth Hazelton from photoquadrats taken for Nishizaki and Carrington 2015. Full citation: Nishizaki, M.T., Carrington, E., 2015. The effect of water temperature and velocity on barnacle growth: Quantifying the impact of multiple environmental stressors. Journal of Thermal Biology, What sets the limit? How thermal limits, performance and preference in ectotherms are influenced by water or energy balance 54, 37–46. https://doi.org/10.1016/j.jtherbio.2015.02.002. The raw data is also available on Zenodo as ~/data/subtidal_data/Lisa_data.csv.
Variables
- Tile: The tile on which barnacles are attached
- Temp: Experimental temperature in Celsius
- Init_date: Start date of the experiment
- Final_date: End date of the experiment
- Init_operc: Inital opercular length (mm)
- Final_operc: Final opercular length (mm)
File: Physiology_aquatic_total_resp_FHL.csv
Description: Aquatic respiration collected by Gordon Ober. The raw data is also available on Zenodo as ~/data/physiology_data/AQtotalresp_FHL.csv
Variables
- Date: Experimental date
- Pop: Friday Harbor population
- Temp: Experimental temperature in Celsius
- Block: Experimental Block
- Barnacle: Barnacle ID
- Operc: Opercular length (mm)
- total_umol: Total respiration over the experimental period (total umol consumed)
- Minutes: Time (min)
- Respiration Rate: Respiration rate in umol/min
File: Physiology_aerial_exposure_and_recovery_respiration_data_from_the_cost_of_emersion.csv
Description: Aerial respiration and recovery respiration data published in Ober et al. 2019. Full citation: Ober, G.T., Rognstad, R.L., Gilman, S.E., 2019. The cost of emersion for the barnacle Balanus glandula. Marine Ecology Progress Series 627, 95–107. https://doi.org/10.3354/meps13058. The raw data is also available on Zenodo as ~/data/physiology_data/FHLmean15mins_recovery_forMolly_40deg.csv
Variables
- Barnacle: ID number
- operculum_length: Opercular length (mm)
- AFDW: Ash-free dry weight (mg)
- Date: Experimental date
- Block: Experimental block
- Temp: Aerial exposure temperature in Celsius
- air_15min: mean respiration (umol) over a period of 15 minutes
- total_aquat: total aquatic respiration (umol) across the ramp to exposure temperature, the exposure period and recovery
File: Physiology_aquatic_feeding_rates_FHL.csv
Description: Feeding data collected by Xenia Rangaswami, Gretchen Kioschos, Jaime Martin, Gordon Ober, and Sarah Gilman. The raw data is also available on Zenodo as ~/data/physiology_data/aqfeedFHL_log.csv
Variables
- ID: Barncle ID
- Date:Experimental date
- Pop: Population is Friday Harbor Labs
- Block: Experimental Block
- Trial: Experimental Trial (1-4)
- Row_num: Spreadsheet row number
- Temp: Experimental temperature in Celsius
- fmins: Experimental duration (mins)
- Before: Number of brine shrimp cycsts counted at the start of the experiment
- After: Number of brine shrimp cycsts counted at the end of the experiment
- After_w_control: Number of brine shrimp cycsts counted at the end of the experiment, accounting for the no-animal control
- Dif: The difference between the number of brine shrimp cysts at the start and end of the experiment
- m: The rate at which brine shrimp cysts are consumed, based on an exponential curve (per min)
- OperculumLength: Animal opercular length (mm)
Code/software
Roberts E.A. Emily-A-Roberts/Bglandula_FHL_energetics: Balanus glandula thermal physiology (Balanus). 2024 [cited 2025 Mar 6] Database: Zenodo. [Internet]. Available from: https://doi.org/10.5281/zenodo.14984670
Access information
Other publicly accessible locations of the data:
Data was derived from the following sources:
- Tide data was sourced from: National Buoy Data Center Station FRDW1 - 9449880, NOAA National Ocean Service
- Ober, G.T., Rognstad, R.L., Gilman, S.E., 2019. The cost of emersion for the barnacle Balanus glandula. Marine Ecology Progress Series 627, 95–107. https://doi.org/10.3354/meps13058
- Nishizaki, M.T., Carrington, E., 2015. The effect of water temperature and velocity on barnacle growth: Quantifying the impact of multiple environmental stressors. Journal of Thermal Biology, What sets the limit? How thermal limits, performance and preference in ectotherms are influenced by water or energy balance 54, 37–46. https://doi.org/10.1016/j.jtherbio.2015.02.002
Length and growth measurements are determined from photoquadrat pixel data. Seperate experiments were used to characterize B. glandula response to temperature. This includes aquatic feeding, aquatic respiration, aerial exposure and recovery respiration. We also include an independent growth dataset (subtidal) used to parameterize the model.