Data from: Hypoxia drives invertebrate assemblages in agriculturally influenced estuaries
Data files
Sep 28, 2026 version files 262.06 KB
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2016_Env_Data_Figure6_Figure7_Table2.csv
11.81 KB
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2017_Env_Data_Figure6_Figure7_Table3.csv
1.72 KB
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2017_Head_Tide_Discharge_Nitrate_Load_Estimates_Table3.csv
222.98 KB
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2017_Head_Tide_Nitrate_Concentations_Table3.csv
1.64 KB
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Mean__2016_Invertebrates_n_3_Light_Traps_Fig_2_Fig_7.csv
7.04 KB
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Mean__2017_Invertebrates_n_4_Light_Traps_Fig_3_Fig_7.csv
971 B
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README.md
8.87 KB
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Sed_Experiment_2017_Table_S2_Figure_S1_Figure_S12.csv
7.03 KB
Abstract
Estuarine stressors originate from the river-ocean transition and anthropogenic inputs. Agricultural nitrate exports promote macroalgae growth in estuaries, ultimately leading to the production of low-oxygen conditions. Herein examined the extent water-column hypoxia, combined with other environmental factors, influences epibenthic invertebrate assemblages in Prince Edward Island, Canada. First, mobile invertebrate abundances in upper, mid, and lower sites of three eutrophic estuaries were compared to environmental variables. In the following year, invertebrate collections from ten mid-estuary sites were correlated to habitat and stressor variables. Field-sediment toxicity was assessed by amphipod survival through laboratory exposures. Processes along the river-ocean transition impacted invertebrates as abundances of strict-marine taxa declined upstream. In both investigations, tidal variability and associated hypoxia intensity were the predominant factors corresponding with euryhaline taxon abundances. Agricultural intensity did not correspond to Gammarus survival in microcosms. Higher normoxia duration positively correlated with increasing sand-shrimp and mysid abundances, but negatively correlated with hydrobid snail abundances, irrespective of salinity. Gammarus amphipod abundances were positively associated with hypoxia duration when accounting for ocean-influence, and abundances were highest with intermediary hypoxia among mid-estuaries. These investigations highlight that local hypoxic conditions are the most direct feature affecting mobile invertebrate assembly within shallow estuaries.
Dataset DOI: 10.5061/dryad.sn02v6xkk
Description of the data and file structure
Sampling for this paper was conducted in shallow, well-mixed estuaries of Prince Edward Island, Canada. Estuaries sampled for mobile invertebrates and habitat variables were selected to span gradients in agricultural land-use intensity and tidal characteristics. None of the invertebrates reported are currently known to be of conservation concern.
Mobile invertebrates were collected using light-baited traps deployed overnight for 24 h during two field surveys conducted in 2016 and 2017. Sampling occurred at upper, mid, and lower estuary sites in 2016, and at mid-estuary sites along an agricultural gradient in 2017. Water quality parameters were measured using multi-parameter sondes, loggers, and discrete water samples lab analysis. Macrophyte biomass was collected using rakes. Sediment samples were collected and analyzed for proxies of organic matter and carbonate content. Remaining physical and chemical characteristics were modeled using publicly available GIS layers, weather and flow data. Discharge and weather data were accessed from these government websites: https://climate.weather.gc.ca/historical_data/search_historic_data_e.html and https://wateroffice.ec.gc.ca/mainmenu/historical_data_index_e.html.
For the sediment toxicity screening experiment, laboratory-reared Gammarus lawrencianus amphipods were exposed to field-collected sediments from mid-estuary sites for 14 days under controlled conditions to assess percent survival for potential toxicity.
Statistical analyses used in the paper from this data, include: Principal Component Analysis (PCA), Generalized Linear Modeling (GLM), and distance-based redundancy analysis (db-RDA), were conducted in R to evaluate relationships between environmental variables and invertebrate assemblages.
Variable Definitions and Units
- Mobile Invertebrates: Total counts per trap or average of counts per trap for each taxon, generally at the genus level.
- Macrophyte Biomass: Grams (g).
- Water Quality Parameters: Milligrams per liter (mg/L) for general measures; Chlorophyll-a is in micrograms per liter (ug/L); Salinity is in practical salinity units (PSU); Nitrate load is in kilograms per day (kg/day).
- Sediment Composition: Loss on Ignition percent (LOI%).
- Physical & Modeled Characteristics: Temperatures are in degrees Celsius (°C); Depths are in meters (m); geographic areas (hectares, ha); Discharge is in cubic meters per second (m3/s).
- Toxicity Screening: Survival is recorded as percent survival (%).
(Note: Unit conversions are explicitly noted within the individual data files.)
Files and variables
File: 2016_Env_Data_Figure6_Figure7_Table2.csv
Description
Variables
- : Row Number Identifier
- Sample: Sample Number Identifier
- Estuary: Geographic Location Identifier
- Location: Estuary Section Identifier
- Site: Site Sampled (1, Upper; 2, Mid; 3, Lower)
- Period: Ordered Sampling Period
- Mean.D.: Mean Depth m
- max_d: Max Depth m
- min_d: Min Depth m
- D.Range: Depth Range m
- Julian: Julian Day
- longitude: Geographic Longitude (Decimal Degrees)
- latitude: Geographic Latitude (Decimal Degrees)
- Sheet.Green: Sheet Green Macroalgae Biomass
- Fine.Green: Filamentous Green Macroalgae Biomass
- R.Macro.: Red Macroalgae Biomass
- B.Macro.: Brown Macroalgae Biomass
- Seagrass: Seagrass Biomass
- Ter.Detritus: Terrestrial Detritus Biomass
- Org.LOI: Organic Loss on Ignition
- Inorg.LOI: Inorganic Loss on Ignition
- Chla: Chlorophyll-a ug/L
- Sal.: Salinity PSU
- Mean.T.: Mean Temperature
- T_max: Max Temperature
- T_min: Min Temperature
- T.Range: TemperatureRange
- Mean.D.O.: Mean Dissolved Oxygen mg/l
- O_max: Max Dissolved Oxygen mg/l
- O_min: Min Dissolved Oxygen mg/l
- D.O.Range: Oxygen Range mg/l
- O2<4: Hours under 4 mg/L Dissolved oxygen
- O2>10: Hours over 10 mg/L Dissolved oxygen
- ET_48: 48 h Eutrophic Time similar to https://csas-scas.dfo-mpo.gc.ca/publications-publications/f923f38f-24a9-4f05-830f-9f5fa3b02f41?lang=en
- REI: 48 h Relative Exposure Index
- pH: pH
- G.Macro.: Total Green Macroalgae Biomass
File: 2017_Env_Data_Figure6_Figure7_Table3.csv
Description
Variables
- : Estuary Number
- Agri. Int.: Agricultural Land Use % of draining watershed area
- pH: pH
- Org. LOI: Organic Loss on Ignition
- Inorg. LOI: Inorganic Loss on Ignition
- Mean Sal.: Mean Salinity PSU
- S. Range: Salinity Range PSU
- Mean T.: Mean Temperature
- T. Range: Temperature Range
- Mean D.O.: Mean Oxygen mg/l
- O. Range: Oxygen Range mg/L
- REI: Relative Exposure Index
- Tidal Amp.: Tidal Amplitude m
- Drainage Area: Watershed Drainage Area ha
- Sur.: Experimental Amphipod Survival % of total
- N.: Average Nitrate mg/L
- O2>10: Hours under 4 mg/L Dissolved oxygen
- O2<4: Hours over 10 mg/L Dissolved oxygen
- N.Load: Nitrate Load kg/day
File: 2017_Head_Tide_Nitrate_Concentations_Table3.csv
Description
Variables
- Site: Estuary Sampled, Geographic Location Identifier
- Date: Sampling Date
- Nitrate: Nitrate concentration mg/L
File: 2017_Head_Tide_Discharge_Nitrate_Load_Estimates_Table3.csv
Description
Variables
- River: Estuary sampled, Geographic Location Identifier
- ID: Hydrometric Station Identifier
- Drainage_Area: Drainage are ha
- YEAR: Year
- Month: Month
- DD: Day
- Date: Sampling date
- Discharge_Hydro: Hydrometric station discharge (m^3/sec)
- Site: Estuary
- Pour_Area: Sampling site drainage area ha
- Ratio: Ratio hydrometric to sampling drainage area
- Discharge: estimated discharge (m^3/sec)
- L/Sec: discharge
- mg/L: Average Nitrate
- mg/sec: Nitrate mass per second
- kg/day: nitrate mass per day
File: Mean__2016_Invertebrates_n_3_Light_Traps_Fig_2_Fig_7.csv
Description
Variables
- : Row number identifier
- Estuary: Sampled Geographic Location Identifier
- Site: Site Sampled (1, Upper; 2, Mid; 3, Lower)
- Period: Ordered Sampling Period
- C.septemspinosa: Crangon septemspinosa count
- Palaemon: Palaemon spp. count
- D.sayi: Dyspanopeus sayi count
- A.longimana: Ampithoe longimana count
- M.nitida: Melita nitida count
- Corophiidae: Corophiidae count
- Jassa: Jassa spp. count
- A.vadorum: Ampelisca vadorum count
- Caprellidae: Caprellidae count
- C.laeviuscula: Calliopius laeviusculus count
- D.thea: Dexamine thea count
- Idotea: Idotea spp. count
- Jaera: Jaera spp. count
- H.rapax: Hargeria rapax count
- N.americana: Neomysis americana count
- Mysis: Mysis spp. count
- Diastylidae: Diastylidae count
- Argulus: Argulus spp. count
- Chironomidae: Chironomidae count
- Trichocorixa: Trichocorixa spp. count
- Tritia: Tritia spp. count
- Hydrobiidae: Hydrobiidae count
- Cerithiidae: Cerithiidae count
- A.lunata: Astyris lunata count
- Corynidae: Corynidae count
- Gammarus: Gammarus spp. count
File: Sed_Experiment_2017_Table_S2_Figure_S1_Figure_S12.csv
Description
Variables
- Site: Estuary Source, Geographic Location Identifier
- Number: Experimental Jar Identifier
- Temp: Temperature
- DO mg/L: Dissolved Oxygen mg/L
- Sal_Cor: Salinity PSU
- ph_Cor: pH
- LOI 550 (%): Organic Loss on Ignition
- LOI 950 (%): Inorganic Loss on Ignition
- Alive Adult: Number of adults alive after experimental exposure
- %Survival: Percent of total surviving
- %Mortality: Percent of total which died
- % Ag: Percent of land area for estuary which has Agricultural influence
- Date: Date of experiment end
File: Mean__2017_Invertebrates_n_4_Light_Traps_Fig_3_Fig_7.csv
Description
Variables
- : Estuary Number
- Estuary: Estuary Sampled, Geographic Location Identifier
- C.septemspinosa: Crangon septemspinosa count
- Palaemon: Palaemon spp. count
- R.harrisii: Rhithropanopeus harrisii count
- Gammarus: Gammarus spp. count
- A.longimana: Ampithoe longimana count
- Corophiidae: Corophiidae count
- Idotea: Idotea spp. count
- Jaera: Jaera spp. count
- L.rapax: Hargeria rapax count
- N.americana: Neomysis americana count
- Mysis: Mysis spp. count
- Diastylidae: Diastylidae count
- Argulus: Argulus spp. count
- Chironomidae: Chironomidae count
- Trichocorixa: Trichocorixa spp. count
- Tritia: Tritia spp. count
- Hydrobiidae: Hydrobiidae count
- Cerithiidae: Cerithiidae count
- Nereidae: Nereidae count
