Data from: Termites became the dominant decomposers of the tropics after two diversification pulses
Data files
Apr 15, 2026 version files 24.95 GB
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File_1_TER_UCE_DB_CONTRIB_5.fasta.gz
3.54 GB
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File_10_MCMCtree.tar.gz
1.73 GB
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File_2_trees.tar.gz
612.08 KB
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File_3_sampling_fractions.txt
39.94 KB
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File_4_BAMM.tar.gz
2.59 GB
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File_5_RevBayes_BSD.tar.gz
174.57 MB
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File_6_RPANDA.tar.gz
753.21 KB
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File_7_TreePar.tar.gz
102.41 KB
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File_8_RevBayes_EDR.tar.gz
16.91 GB
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File_9_CoMET-CRABS.tar.gz
5.05 MB
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README.md
3.09 KB
Abstract
Inferring insect diversification patterns is challenging due to the incompleteness of the fossil record, but major evolutionary questions can be addressed using thoroughly sampled phylogenetic trees. Here, we investigated the diversification dynamics of termites from molecular phylogenies that included 2,800 samples representing 1,377 putative species of the nearly 3,000 described. Our analyses, employing both likelihood and Bayesian birth-death models, consistently estimated near-zero extinction rates despite fossil evidence of extinctions. Consequently, we focused on net diversification rates and identified two consistent rate shifts. The first shift occurred near the end of the Cretaceous, likely illustrating the diversification of Kalotermitidae, which were then outcompeted by the Neoisoptera. The second shift involved multiple lineages of Neoisoptera, which diversified as they expanded globally at the Eocene-Oligocene transition. Considering biogeographic history, biotic and abiotic factors, our data indicate that termites rose to dominance as the primary insect decomposers in tropical ecosystems in response to global climatic shifts.
Authors: Simon Hellemans, Menglin Wang, Corentin Jouault, Mauricio M. Rocha, Jaqueline Battilana, Tiago F. Carrijo, Frédéric Legendre, Fabien L. Condamine, Yves Roisin, Eliana M. Cancello, Rudolf H. Scheffrahn, Thomas Bourguignon
Archive sizes
gzip -l *.gz
| compressed | uncompressed | ratio | uncompressed_name |
| 1733933075 | 112197120 | -0.999 | File_10_MCMCtree.tar |
| 3543730431 | 3009871938 | -0.178 | File_1_TER_UCE_DB_CONTRIB_5.fasta |
| 612078 | 2109952 | 0.709 | File_2_trees.tar |
| 2586009322 | 3310202368 | 0.218 | File_4_BAMM.tar |
| 174569113 | 2509596160 | 0.93 | File_5_RevBayes_BSD.tar |
| 753206 | 1215488 | 0.38 | File_6_RPANDA.tar |
| 102408 | 264704 | 0.613 | File_7_TreePar.tar |
| 16908504300 | 4047868928 | -0.999 | File_8_RevBayes_EDR.tar |
| 5049864 | 9778176 | 0.483 | File_9_CoMET-CRABS.tar |
| 24953263797 | 13003104834 | -0.92 | (totals) |
File 1: "File_1_TER_UCE_DB_CONTRIB_5.fasta.gz".
New UCE dataset presented in this study.
Extracted UCEs from all samples using the bait set produced by Hellemans et al. (2022; doi: 10.1016/j.ympev.2022.107520).
This is contribution #5 for the Termite UCE Database.
Each sample was assigned a unique identification code (TER-X-UCEDB).
The database is maintained at: https://github.com/oist/TER-UCE-DB/.
File 2: "File_2_trees.tar.gz".
All phylogenetic trees produced in this study:
A: raw trees from IQ-TREE;
B: dated trees from LSD2;
C: dated OTU-trimmed trees used as inputs in downstream analyses.
File 3: "File_3_sampling_fractions.txt".
Custom sampling fractions used in BAMM analyses.
File 4: "File_4_BAMM.tar.gz".
Scripts, inputs, and outputs of all eight BAMM analyses.
File 5: "File_5_RevBayes_BSD.tar.gz".
Scripts, inputs, and outputs of RevBayes analyses (BSD model).
File 6: "File_6_RPANDA.tar.gz".
Scripts, inputs, and outputs of RPANDA analyses.
File 7: "File_7_TreePar.tar.gz".
Scripts, inputs, and outputs of TreePar analyses.
File 8: "File_8_RevBayes_EDR.tar.gz".
Scripts, inputs, and outputs of RevBayes analyses (EDR model).
File 9: "File_9_CoMET-CRABS.tar.gz".
Scripts, inputs, and outputs of CoMET model (in TESS) and CRABS analyses.
File 10: "File_10_MCMCtree.tar.gz"
Trees, inputs, and outputs of five MCMCtree time calibration analyses:
A: the classification tree from Hellemans et al. (2024; doi: 10.1038/s41467-024-51028-y);
B: four subtrees matching the taxon sampling of the classification tree subsampled from the complete trees reconstructed herein.
