Data from: Lamprey genotypes predispose maturation timing phenotypes in coastal and interior river basins
Data files
Mar 31, 2026 version files 132.23 KB
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1_COASTAL_Lamprey_Tagging_Data.csv
17.42 KB
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3_COASTAL_Lamprey_summary_of_radio_tag_fish_fates.csv
43.53 KB
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K_Coastal.txt
4.31 KB
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K_Coastal.xlsx
12.43 KB
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K_Interior.txt
3.58 KB
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K_Interior.xlsx
11.52 KB
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Mass_Coastal.txt
5.54 KB
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Mass_Coastal.xlsx
12.41 KB
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Mass_Interior.txt
7.35 KB
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Mass_Interior.xlsx
10.73 KB
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README.md
3.41 KB
Abstract
Previous studies have identified different maturation ecotypes for Pacific lamprey (Entosphenus tridentatus). Identification of these ecotypes was based on the association of candidate genotypes at marker Etr_464 with lamprey phenotype (ovary mass). More evidence is needed to validate the association of the candidate genotypes with the timing of sexual maturation. Here, we genotyped Etr_464 in adult lamprey from coastal and interior watersheds and tested whether the genotypes were associated with maturation phenotypes. Coastal lamprey were predominantly of the ocean-maturing (ocean) genotype, whereas interior lamprey were primarily of the stream-maturing (stream) genotype. Radio-tagged coastal lamprey of the ocean genotype spawned within the collection year, whereas the stream genotype spawned the following year. Similarly, captive-held interior lamprey of the ocean genotype matured earlier relative to the stream genotype. However, the maturation schedule for both genotypes in interior lamprey was protracted relative to coastal lamprey. These results validate the association between the candidate genotypes and maturation timing in lamprey and suggest that ecotype names should be refined to include geography and maturation timing (i.e., coastal-early, coastal-late, interior-early, and interior-late). Further research is necessary to elucidate the role of genetic and environmental interactions (i.e., phenotypic plasticity) in influencing maturation timing of Pacific lamprey.
Dataset DOI: 10.5061/dryad.tqjq2bwcr
Description of the data and file structure
This data consists of 10 files:
- The first 2 .csv files present the data for lamprey collected and tagged on the Oregon Coast.
- The next 4 Excel spreadsheet files present data on Fulton's condition factor (K) for coastal (1 file) and interior (1 file) lamprey, and mass on coastal (1 file) and interior (1 file) lamprey.
- 4 script files of R code.
Files and variables
File: 1_COASTAL_Lamprey_Tagging_Data.csv
Variables
- Morphological data on collected and tagged lamprey.
- "Lamprey ID#" = the unique identifying number for each lamprey.
- "Collection method & location" = method for collecting lamprey and location where collected.
- "Tagging Date" = The date that fish were tagged.
- "Radio Tag ID #" = another unique identifier for those lamprey that were radiotagged.
- "Floy Tag#" = another unique identifier for each lamprey.
- "Total length (mm)" = the total length of each lamprey to the nearest millimeter.
- "Girth (mm)" = the girth of each lamprey to the nearest millimeter; please see the paper for details on where this was measured.
- "Weight (g)" = the body mass in grams of each lamprey.
- "Fulton's condition factor" = k = weight (grams) of each fish, divided by the cube of the total length (mm), multiplied by 100,000. This metric provides the relative sense of the robustness of each fish.
- "Dorsal fin gap (mm)" = the distance between the two dorsal fins of each fish; please see the publication for further details.
- "Notes" = self-explanatory.
- "Surgeon (initials)" = the person who performed the surgical implantation of radio tags into lamprey.
- "Sex" = Based on the secondary sexual characteristics shown by the external morphology of each fish, particularly that of sexually mature lamprey, and sometimes on the presence of observed eggs during surgical radio tag implantation.
- "Maturation status" = Based on the secondary sexual characteristics of each fish.
- "Genetic prediction Ocean/Intermediate/Stream" = based on genetic data; see the publication for more details.
File: 3_COASTAL_Lamprey_summary_of_radio_tag_fish_fates.csv
Variables
- Summary of radio detection fates.
- Many of the variables in this table are the same as those in the file, "1_COASTAL_Lamprey_Tagging_Data.xlsx".
- Other column headers are self-explanatory.
File: K_Coastal.xlsx
Description: Fulton's condition factor for lamprey from the Oregon Coast.
File: K_Interior.xlsx
Description: Fulton's condition factor for lamprey from the interior.
File: Mass_Coastal.xlsx
Description: Body mass data from lamprey from the Oregon Coast.
File: Mass_Interior.xlsx
Description: Body mass data for lamprey from the interior.
File: K_Coastal.txt
Description: R code for Fulton's condition factor for lamprey from the Oregon Coast.
File: K_Interior.txt
Description: R code for Fulton's condition factor for lamprey from the interior.
File: Mass_Coastal.txt
Description: R code for body mass for lamprey from the Oregon Coast.
File: Mass_Interior.txt
Description: R code for body mass for lamprey from the interior.
Code/software
R version 4.5.2
