Data from: Accelerated speciation in temperate Cannabaceae: The role of pre-adaptation, ecological opportunities, and niche divergence
Data files
Jan 07, 2026 version files 362.61 KB
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Cannabaceae_MCC.tree
2.99 KB
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Cannabaceae-trees100.nex.trees
344.91 KB
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code_for_GEB.r
12.55 KB
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README.md
2.16 KB
Abstract
Macroevolutionary processes underlying biome transitions and global patterns of species diversity and ecological traits remain poorly understood across many clades. We investigated tropical-to-temperate biome transitions in Cannabaceae (the hemp family) to test the hypothesis that pre-adaptive traits, particularly deciduous leaf habit, together with ecological opportunities in temperate environments, promoted niche divergence and elevated speciation rates. Using a well-resolved, time-calibrated phylogeny representing approximately 70% of extant Cannabaceae diversity, we integrated data on leaf duration, species occurrences, and environmental variables. Phylogenetic comparative analyses were employed to assess correlated evolution between deciduousness and biome transitions, and to estimate speciation and niche evolution rates across tropical, temperate, and widespread lineages. Our results support correlated evolution between leaf habit and biome shifts, with deciduous lineages exhibiting higher rates of transition from tropical to temperate regions than evergreen lineages. Temperate lineages, particularly those associated with a hidden state, showed increased speciation rates relative to tropical lineages. In addition, niche divergence occurred more rapidly in temperate than in tropical lineages, especially along climatic dimensions related to temperature variability and seasonal precipitation. These findings suggest that deciduousness functioned as a pre-adaptive trait facilitating colonization of temperate environments in Cannabaceae, and that the expansion of temperate biomes since the Oligocene provided ecological opportunities that promoted speciation through multidimensional niche divergence.
Dataset DOI: 10.5061/dryad.v6wwpzh8g
Description of the data and file structure
This dataset contains the species information, regional assignment, leaf duration types, and data sources, which are documented in Supporting_Information_Appendix1-TableS1.xlsx. Additionally, the MCC phylogenetic tree,100 BEAST posterior phylogenetic trees, and scripts required to replicate analyses in Li et al, accepted in Ecology and Evolution. The MCC tree with node numbers used in this study is also available here.
Files and variables
File: code_for_GEB.r
Description: R script is used for statistical analyses and visualizations. This script performs a series of phylogenetic comparative analyses: it first visualizes node numbers on a Cannabaceae phylogenetic tree, then tests for correlated evolution between traits and regions using Pagel’s test. It further applies GeoHiSSE models to estimate region-dependent diversification rates (with and without hidden states) and uses BioGeoBEARS to reconstruct ancestral biogeographic ranges under the DEC model.
File: plot_MCC_with_nodenumber.pdf (uploaded to Zenodo)
Description: The MCC tree with node numbers used in this study.
File: Supporting_Information_Appendix1-S1.xlsx (uploaded to Zenodo)
Description: Includes species information, regional assignment, leaf duration types, and data sources used in this study.
File: Cannabaceae_MCC.tree
Description: MCC phylogenetic tree for Cannabaceae. Phylogenetic tree for the Cannabaceae, showing evolutionary relationships among species. The parentheses indicate branching order (shared ancestry), species names are the tips, and the numbers after colons are branch lengths, typically representing divergence time (e.g., millions of years) or genetic change.
File: Cannabaceae-trees100.nex.trees
Description: 100 phylogenetic trees for Cannabaceae. Phylogenetic tree showing evolutionary relationships among Cannabaceae species.
