Data from: Effect of mitochondrial oxidative stress on regulatory T cell manufacturing for clinical application in transplantation: Results from a pilot study
Data files
Nov 05, 2025 version files 67.12 MB
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CD25_70nm_STEM_HAADF_0006_HAADF_TEM.png
16.81 MB
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CD25_70nm_STEM_HAADF_0006_HAADF.png
5.51 MB
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CD25_70nm_STEM_HAADF_0007_HAADF_TEM.png
16.81 MB
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CD25_70nm_STEM_HAADF_0007_HAADF.png
5.20 MB
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Cell_pictures_in_png_format.zip
1.93 MB
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IMG_6730.HEIC
1.94 MB
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IMG_6732.HEIC
1.47 MB
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IMG_6733.HEIC
1.55 MB
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IMG_6736.HEIC
1.54 MB
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IMG_6737.HEIC
1.32 MB
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IMG_6738.HEIC
1.39 MB
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IMG_6740.HEIC
1.44 MB
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IMG_6786.HEIC
1.70 MB
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IMG_6788.HEIC
1.71 MB
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IMG_6803.HEIC
1.76 MB
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IMG_6804.HEIC
1.80 MB
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IMG_6805.HEIC
1.68 MB
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IMG_6806.HEIC
1.55 MB
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README.md
6.61 KB
Abstract
The manufacturing process of regulatory T (Treg) cells for clinical application begins with the positive selection of CD25þ cells using superparamagnetic iron oxide nanoparticle (SPION)-conjugated anti-CD25 antibodies (spCD25) and immunomagnetic cell separation technology. Our findings revealed that the interaction of spCD25 with its cell target induced the internalization of the complex spCD25–interleukin-2 receptor. Accumulation of intra- cellular spCD25 triggered oxidative stress, causing delayed Treg expansion and temporary reduction in suppressor activity. This activation delay hindered the efficient generation of clinically competent cells. During this early phase, Treg cells exhibited elevated mitochondrial superoxide and lipid peroxidation levels, with a concomitant decrease in mitochondrial respiration rates. The results uncovered the increased mitochondrial unfolded protein response. This protective, redox-sensitive activity is inherent in Tregs when contrasted with homologous, spCD25-treated, conventional T cells. Although the temporary effects of spCD25 on clinically competent cells did not impede their use in a safety/feasibility pilot study with kidney transplant recipients, it is reasonable to anticipate a potential reduction in their therapeutic efficacy. The mechanistic understanding of the adverse effects triggered by spCD25 is crucial for improving the manufacturing process of clinically competent Treg cells, a pivotal step in the successful implementation of immune cell therapy in transplantation.
Dataset Overview
This dataset contains electron microscopy images used for structural characterization of the CD25 sample at various imaging modes and detector settings.
All image filenames encode descriptive parameters including sample ID, thickness, imaging technique, and detector type.
To ensure interoperability, .HEIC files (from camera capture) should be converted to .png format before analysis. These have been provided in the folder "Cell pictures in png format.zip"
File Inventory and Descriptions
| File Name | Description |
|---|---|
| CD25_70nm_STEM_HAADF_0006_HAADF_TEM.png | STEM image of CD25, 70 nm section. Image #0006 collected using HAADF detector; includes TEM overlay. |
| CD25_70nm_STEM_HAADF_0006_HAADF.png | Same sample and section (70 nm), HAADF-STEM image without TEM overlay. |
| CD25_70nm_STEM_HAADF_0007_HAADF_TEM.png | Image #0007 from the 70 nm CD25 section, HAADF-STEM with TEM overlay. |
| CD25_70nm_STEM_HAADF_0007_HAADF.png | Image #0007, HAADF-STEM only (no overlay). |
| IMG_6730.HEIC | Camera-captured image of specimen setup (e.g., grid alignment). |
| IMG_6732.HEIC | Sample overview image showing microscope stage positioning. |
| IMG_6733.HEIC | Setup image highlighting region of interest before data acquisition. |
| IMG_6736.HEIC | Image documenting instrument calibration setup. |
| IMG_6737.HEIC | Reference photo for stage or tilt orientation. |
| IMG_6738.HEIC | Context image for sample holder or instrument control view. |
| IMG_6740.HEIC | Overview of electron microscopy setup or beam alignment stage. |
| IMG_6786.HEIC | Additional reference image captured during data collection session. |
| IMG_6788.HEIC | Contextual image for secondary sample mounting. |
| IMG_6803.HEIC | Laboratory photo showing specimen context or preparation. |
| IMG_6804.HEIC | Additional documentation image of specimen configuration. |
| IMG_6805.HEIC | Capture showing sample grid prior to imaging. |
| IMG_6806.HEIC | Final setup image recorded before main data acquisition. |
Note:
.HEIC(High Efficiency Image Container) is a proprietary format.
For full interoperability, please convert all.HEICfiles to.pngwhile retaining the same filenames.
These HEIC files document sample setup, preparation, and imaging context rather than raw microscopy data.
Naming Convention
Each structured filename follows:
[SampleID]_[Thickness]_[MicroscopyType]_[ImagingMode]_[ImageNumber]_[Detector][_OptionalTag].png
| Element | Meaning | Example |
|---|---|---|
| SampleID | Biological or material sample identifier | CD25 |
| Thickness | Sample section thickness (nanometers) | 70nm |
| MicroscopyType | Technique used | STEM = Scanning Transmission Electron Microscopy |
| ImagingMode | Contrast or mode | HAADF = High-Angle Annular Dark Field |
| ImageNumber | Sequential acquisition number | 0006, 0007 |
| Detector | Detector or channel used | HAADF, BF |
| _TEM | Optional suffix indicating a TEM overlay image | |
| .png | File format (converted from .HEIC for compatibility) |
File Format Notes
- Original camera images were
.HEIC. - All microscopy images were saved as
.pngto preserve fidelity and improve software compatibility. - No rescaling or intensity normalization was performed during conversion.
- Metadata (acquisition date, microscope settings) retained where possible.
Data Notes
- The HAADF and TEM images correspond to the same regions at similar magnification, allowing correlation between structural and compositional contrast.
- The
.HEICseries (IMG_6730–IMG_6806) provides contextual and setup documentation for reproducibility and record-keeping.
Recommended Usage
Open .png images in:
- FIJI / ImageJ
- Python (
matplotlib.image,Pillow, orOpenCV) - MATLAB
- Any standard image viewer
If you need to include .HEIC files, convert them first (e.g., using heif-convert or macOS Preview → Export → PNG).
Citation
If you use this dataset, please cite:
Gedaly R, Orozco G#, Lewis L. J, Valvi D, Chapelin F, Khurana A, Hidalgo G. E, Shmookler A, Tripathi A, Zhang C, Zwischenberger J. B, Marti F.
Effect of mitochondrial oxidative stress on Regulatory T Cell manufacturing for clinical application in transplantation: results from a pilot study.
American Journal of Transplantation, (2025).
Electron Microscope. Unlabeled control (Kit-Treg) cells and spCD25-labeled Treg cells were fixed 3.9% paraformaldehyde and 3.5% glutaraldehyde at 4°C for 1 hour followed by 3 washes in sucrose for 5 minutes. The cells were dipped with 1% OsO4 at 4°C for 1 hour. Cells were then resuspended in 0.1 M buffer and dehydrated at 4°C in an ascending series of ethanol baths and finally twice in propylene oxide at room temperature. The cells were infiltrated overnight in a 1:1 mixture of propylene oxide and epoxy resin. The next day, the cells were resuspended in fresh resin and polymerized for 48 hours at 60°C. Selected areas were thin sectioned on a microtome at 60-80 nm, mounted on copper 300 mesh grids and then stained with uranyl acetate and lead citrate. Grids were examined using a FEI Talos F200X transmission electron microscope (TEM). Inverted high-angle annular dark-field images of scanning TEM (HAADF-STEM) of intracellular spCD25 particles and energy-dispersive X-ray spectroscopy (EDS) spectra were acquired using inbuilt software and digital camera.
Prussian blue stains. Treg and Tconv cells were stained with the Prussian blue reaction to identify the presence of intracellular ferric iron following the reported procedure. Histologic images were acquired on a Nikon Ti-U Microscope (Nikon, Tokyo, Japan) with 60X objectives.
