Microsatellite Genotype data of Populus fremontii and Populus angustifolia
Data files
Oct 10, 2025 version files 20.49 KB
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Populus_Genotype_Data_Sculletal2025.csv
18.20 KB
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README.md
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Abstract
Interspecific hybridization in forest trees is common and can have important implications for ecology, evolution, and the conservation of forest habitats. Hybridization often results in greater genetic diversity and opportunities for backcrossing with one or both parents, which may introduce novel genotypes that influence biodiversity and ecosystem processes. However, the extent of hybridization, direction of backcrossing, and overall survival and performance of hybrids is often poorly understood, leading to inaccurate assessments of the role hybrids may play in forest ecology and conservation. Here, we investigate interspecific hybridization and the extent and direction of backcrossing between two species, Populus fremontii (S. Watson) and P. angustifolia (E. James ex Torr.), which are broadly distributed along riparian corridors in the riparian ecosystems of the southwestern United States. Using molecular assays of six putative hybrid zones and a common garden trial we test the following: (1) whether putative hybrids show evidence of genetic intermediacy relative to the parent species; (2) if confirmed hybrids exhibit higher genetic diversity than either parent species; (3) the extent and direction of backcrossing (uni- or bi-directional) within each site; and (4) whether hybrid derivatives show evidence of higher survival and performance in an experimental common garden consisting of both parents and hybrids that were propagated from the six sites. Our results confirm genetic intermediacy in all six sites, but with varying degrees of backcrossing, genetic diversity, and structure. All six locations reveal extensive bidirectional backcrossing to both parent species, a result that contrasts with previous findings, which suggest that backcrossing is predominantly unidirectional between the two species. Results from our common garden trial indicate that hybrids do not have higher survival or out-perform the parent species, suggesting that heterosis may be limited in this system, or that long-term assessments beyond the duration of our field experiment may be required. Results from this study improve our understanding of the frequency of hybridization, and the associated backcrossing in this system, and provide land managers with information on how hybrids may be employed for the long-term preservation of riparian habitats undergoing rapid environmental change.
This is a dataset of diploid microsatellite genotypes for 163 samples from the genus Populus, using 10 microsatellite loci. Genotypes are reported as fragment lengths in basepairs, and are reported in biallelic format (i.e., two columns per loci).
Dataset DOI: 10.5061/dryad.v9s4mw789
Description of the data and file structure
This is a dataset of diploid microsatellite genotypes for 163 samples from the genus Populus, using 10 microsatellite loci. Genotypes are reported as fragment lengths in basepairs, and are reported in biallelic format (i.e., two columns per loci). The document is formatted as a .csv, with sample names listed in the first column ("Sample"), cross-type is labeled in the second column ("Pop"), and the source location is listed in the third column ("Site"), and loci names listed on the top row (with two names, [locus]_1 and [locus]_2, to account for two columns per locus). Missing data is coded as "0". Information on how the samples were collected and processed can be found in Scull et al. 2025 - "Interspecific Hybridization in Populus L., and Its Implications for the Ecology and Management of Riparian Ecosystems in the Southwestern USA" published in MDPI Forests.
Files and variables
File: Populus_Genotype_Data_Sculletal2025.csv
Description:
Variables
- Sample: Sample ID. Acronym is based on a two-letter abbreviation of the sample site (e.g. "BR"), a one-letter abbreviation of the cross-type (e.g. "F"), and a number identifying the replicate (1, 2, 3, etc).
- Pop: The cross-type of the sample, as identified by structure analysis of the samples. F1 = F1 hybrid, N = narrowleaf, F = Fremont, BCF = backcross to Fremont, BCN = backcross to narrowleaf.
- Site: The name of the river system from which the data was sourced.
- GCPM... etc.: Locus name. Each locus has two columns, [locus]_1 and [locus2], to account for diploid genotypes.
Code/software
This is a .csv that can be opened in any plain-text editor or Microsoft Excel. Data is formatted for use by the program STRUCTURE and any software that can utilize bi-allelic STRUCTURE files.
Access information
Other publicly accessible locations of the data:
- None
Data was derived from the following sources:
- Data was generated using .ab1 fragment analysis files generated on the ABI 3730. Raw fragment traces were scored manually using the program GeneMarker.
