Data from: BICC1 interacts with PKD1 and PKD2 to drive cystogenesis in ADPKD
Data files
May 05, 2026 version files 658.51 KB
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Bpk_Pkd1_mouse_crosses.prism
434.90 KB
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Bpk_Pkd2_mouse_crosses.prism
196.97 KB
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README.md
3.65 KB
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Xenopus_Experiments.xlsx
22.99 KB
Abstract
Autosomal dominant polycystic kidney disease (ADPKD) is primarily of adult-onset and caused by pathogenic variants in PKD1 or PKD2. Yet, disease expression is highly variable and includes very early-onset PKD presentations in utero or infancy. In animal models, the RNA-binding molecule Bicc1 has been shown to play a crucial role in the pathogenesis of PKD. To study the interaction between BICC1, PKD1, and PKD2, we combined biochemical approaches, knockout studies in mice and Xenopus, genetically engineered human kidney cells carrying BICC1 variants, as well as genetic association studies in a large ADPKD cohort. We first demonstrated that BICC1 physically binds to the proteins Polycystin-1 and -2 encoded by PKD1 and PKD2 via distinct protein domains. Furthermore, PKD was aggravated in loss-of-function studies in Xenopus and mouse models, resulting in more severe disease when Bicc1 was depleted in conjunction with Pkd1 or Pkd2. Finally, in a large human patient cohort, we identified a sibling pair with a homozygous BICC1 variant and patients with very early onset PKD (VEO-PKD) that exhibited compound heterozygosity of BICC1 in conjunction with PKD1 and PKD2 variants. Genome editing demonstrated that these BICC1 variants were hypomorphic in nature and impacted disease-relevant signaling pathways. These findings support the hypothesis that BICC1 cooperates functionally with PKD1 and PKD2, and that BICC1 variants may aggravate PKD severity, highlighting RNA metabolism as an important new concept for disease modification in ADPKD.
Dataset DOI: 10.5061/dryad.vmcvdnd65
Description of the data and file structure
These data are the primary data for the mouse and Xenopus experiments described in the paper by Tran et al. (2026).
Files and variables
File: Bpk_Pkd1_mouse_crosses.prism
Description: The Pkd1/Bicc1 mouse crosses were performed using the same Bicc1 hypomorphic allele Bpk in the C57BL/6 background. These mice were intercrossed with the Pkd1fl/fl; Pkhd1-Cre mice, an allele we refer to as Pkd1CD, in this study. Mice were genotyped by PCR, and kidneys were analyzed at postnatal day P7 and P14.
File contains the primary data for the Blood_Urea_Nitrogen (BUN), Kidney Weight (KW), and the Kidney Weight/Body Weight ratio (KW/B, W) as well as cystic indices for all the mice and genotypes analyzed from the Bicc1:Pkd1 crosses
File: Xenopus_Experiments.xlsx
Description: Xenopus laevis embryos obtained by in vitro fertilization were maintained in 0.1x modified Barth medium and staged according to Nieuwkoop and FabIn er. In Xenopus experiments, we performed injections using at least three independent clutches per experimental group. Final numbers of animals/experimental group varied as survival was clutch-dependent,t and animals that did not gastrulate properly or were severely malformed were excluded from subsequent analysis. Microinjections were performed on randomly selected cleaving embryos at the 2- to 4-cell stage for a given antisense MO/MO combination. Data analysis was performed in a blinded fashion, and groups were only revealed post data acquisition. For complete knockdown, a total of 3.2 pMol of Std-MO, Pkd1-sMO, Pkd2-MO, Pkhd1-sMO, or a mixture of 3.2 pMol Bic-C-MO1 and 3.2 pMol Bic-C-MO2 (Bic-C-MO1+2) was injected radially at the 2- to 4-cell stage into Xenopus embryos. Note that Xenopus laevis is allotetraploid, and while we normally target both the L and S allele with one MO, in the case of Bicc1, it requires two. For suboptimal knockdown,s 0.8 pMol of the Bic-C-MO1, Bic-C-MO2, Pkd1-sMO, or Pkd2-MO and 0.4 pMol Pkhd1-sMO were used.
File contains the primary data for the formation of edemas and the expression of Nbc1 upon knockdown of Pkd1, Pkd2, Pkhd,1 and Bicc1 alone and in combination using different concentrations of the morpholino oligos.
File: Bpk_Pkd2_mouse_crosses.prism
Description: Bicc1 +/Bpk and Pkd2 +/ - mice were crossed to generate Bicc1 +/Bpk :Pkd2 +/ - compound heterozygotes athe s F1 generation. These mice were then intercrossed to generate the experimental animals in the F2 generation. Mice were genotyped by PCR, and the kidneys were analyzed at postnatal day P4, P14, and P21. As the study testing the interaction between Bicc1 and Pkd2 was performed in mice of different genetic backgrounds, we generated breeders (Bicc1 +/Bpk: Pkd2 +/ - and Bicc1 +/Bpk: Pkd2 +/ -) in the F1 generation and the experimental animals in the F2 generation.
File contains the primary data for the Blood_Urea_Nitrogen (BUN), Kidney Weight (KW), and the Kidney Weight/Body Weight ratio (KW/BW), as well as cystic indices for all the mice and genotypes analyzed from the Bicc1:Pkd2 crosses.
Code/software
The files are generated in Microsoft Excel for Mac (16.401) and GraphPad Prism for macOS (v10.6.1).
Access information
Other publicly accessible locations of the data:
- none
Data was derived from the following sources:
- none
