Multiphasic blood transcriptomic signatures of radioprotection by BIO 300, a synthetic genistein nanosuspension, in a nonhuman primate model of acute radiation syndrome
Data files
Jun 24, 2026 version files 356.93 GB
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11041151M_fastq_1.zip
16.78 GB
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11041151M_fastq_2.zip
21.75 GB
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add_fastq_1.zip
20.76 GB
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add_fastq_2.zip
22.68 GB
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RA0907M_fastq_1.zip
20.20 GB
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RA0907M_fastq_2.zip
24.67 GB
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RA0944M_fastq_1.zip
18.71 GB
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RA0944M_fastq_2.zip
19.39 GB
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RA0947M_fastq_1.zip
17.61 GB
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RA0947M_fastq_2.zip
12.45 GB
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RA0952M_fastq_1.zip
18.41 GB
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RA0952M_fastq_2.zip
25.29 GB
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RA0953M_fastq_1.zip
21.20 GB
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RA0953M_fastq_2.zip
22.86 GB
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RA1222M_fastq_1.zip
19.38 GB
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RA1222M_fastq_2.zip
11.83 GB
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RA2712M_fastq_1.zip
17.99 GB
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RA2712M_fastq_2.zip
24.95 GB
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README.md
2.80 KB
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sample_mapping.csv
1.19 KB
Abstract
Background
Prophylactic radioprotectors for pre-exposure administration are notably absent, creating a critical gap in radiation emergency preparedness and ARS management. BIO 300, a wet nanomilled formulation of synthetic genistein, is in advanced development as a prophylactic radioprotector with demonstrated survival benefits in murine and nonhuman primate (NHP) models when administered prior to lethal radiation exposure. Longitudinal transcriptomic analysis enables characterization of the molecular mechanisms underlying radioprotective drug action and supports development of potential blood-based monitoring tools for clinical translation. We performed longitudinal blood transcriptome profiling in NHPs receiving 5.8 Gy total-body irradiation to characterize BIO 300's radioprotective mechanisms and identify candidate transcriptional biomarkers of drug activity.
Results
BIO 300 demonstrated multiphasic changes in the transcriptome spanning acute cellular preservation (Days 7 – 10), immune reconstitution (Day 21), and sustained recovery (Day 60), with peak protection spanning 745–865 genes at Days 7–10 and sustained late-phase protection of 558 genes at Day 60. Differential expression analysis revealed four distinct drug-related molecular mechanisms: direct cellular protection, active damage reversal, drug-specific therapeutic responses, and stress attenuation. A core set of 39 genes showing sustained or consistent differential expression was identified, of which 20 carry conventional gene symbols and are functionally interpretable; LOC-designated genes are excluded from functional annotation. Notable annotated genes include SOX2, AKAP11, TIMD4, BTNL10, VNN2, and CLEC1A, representing candidate exploratory transcriptional markers consistent with hematopoietic recovery and immune surveillance. Temporally orchestrated pathway signatures include neuroimmune modulation (Days 7), hemostatic recovery (Day 14), and immunometabolic reconstitution (Day 21).
Conclusions
Our results show that BIO 300 provides multiphasic radioprotection across acute, immune reconstitution, and sustained recovery phases through four distinct mechanisms. Longitudinal transcriptomic signatures identified in this study represent potential blood-based monitoring tools for therapeutic efficacy assessment toward the continued development of BIO 300.
Dataset Overview
This dataset contains all transcriptomic data generated to analyze the radioprotective effect of BIO300 in nonhuman primates (NHPs).
Dataset DOI: 10.5061/dryad.vmcvdnd66
Dataset Organization
Samples were submitted for analysis in two different batches; therefore, there is some discrepancy in file nomenclature between the first and second batches. Please note, some of the .fastq folders are named using animal ID, while some are named using sample ID number. To provide a comprehensive guide to analyzing these files, this information is presented in the sample_mapping.csv.
Most notably, the files below were uploaded using the "-add" prefix. The sample number and corresponding animal ID and timepoint are provided here, as well as in the sample_mapping.csv.
add-73 (11041151M-50d)
add-75 (RA2712M-50d)
add-76 (RA0952M-50d)
add-79 (RA0907M-50d)
add-80 (RA0953M-50d)
add-81 (11041151M-60d)
add-83 (RA2712M-60d)
add-84 (RA0952M-60d)
add-87 (RA0907M-60d)
add-88 (RA0953M-60d)
File Types
FASTQ
(.fastq)
- Uncompressed raw sequencing reads.
(.fastq.gz)
- Compressed raw sequencing reads.
Data File Inventory
FASTQ (.fastq) zip folders contain the .fastq and .fastq.gz files for Reads 1 and 2 for each animal ID or sample number:
- 11041151M_fastq_1.zip
- 11041151M_fastq_2.zip
- RA0907M_fastq_1.zip
- RA0907M_fastq_2.zip
- RA0944M_fastq_1.zip
- RA0944M_fastq_2.zip
- RA0947M_fastq_1.zip
- RA0947M_fastq_2.zip
- RA0952M_fastq_1.zip
- RA0952M_fastq_2.zip
- RA0953M_fastq_1.zip
- RA0953M_fastq_2.zip
- RA1222M_fastq_1.zip
- RA1222M_fastq_2.zip
- RA2712M_fastq_1.zip
- RA2712M_fastq_2.zip
add_fastq_1.zip and add_fastq_2.zip folders
- As previously mentioned, these files include the Read 1 and Read 2 files for the add-73, add-75, add-76, add-79, add-80, add-81, add-83, add-84, add-87, and add-88 samples (corresponding animal IDs and timepoints provided above and in the sample_mapping.csv file).
Reuse
FASTQ (.fastq) zip folders contain the raw RNAseq files for each sample prior to quantification. File names are named using animal ID or sample ID (see sample_mapping.csv for complete details regarding file nomenclature).
FASTQ files with the _1 extension correspond to Read 1, while files ending in _2 represent Read 2. Both files are needed for reprocessing.
For data reprocessing from raw sequencing data, users should download both paired FASTQ files for each animal/sample.
Ethical and Legal
- No human data
- Non-pathogenic sequences
- No restrictions on reuse (CC0)
