Data from: Wild birds affected by Highly Pathogenic Avian Influenza A(H5N1) worldwide: Epidemiological insights into the recent panzootic
Data files
Sep 24, 2025 version files 3.35 MB
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Complete_Data__poultry_F.xlsx
1.37 MB
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Complete_Data_wildbirds.xlsx
1.95 MB
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EFSA-Database.xlsx
18.16 KB
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README.md
3.46 KB
Abstract
In recent years, especially as a consequence of global change, several emerging pathogens have caused alarming effects in wild species. One of these pathogens, the Highly Pathogenic Avian Influenza A(H5N1), is causing global mortalities in animals with an increasing risk to humans. Wild birds play a key role in viral transmission and spread. Using the distribution ranges of wild bird species reported as infected, we mapped global risk areas for viral spread and analyzed the spatio-temporal evolution of H5N1 from 2017 to March 2025. We also examined the overlap between the mapped risk areas and positive cases occurring in wild and poultry over this period to evaluate whether these cases align with the risk areas previously identified. Finally, we evaluated whether ecological traits of wild birds, such as gregariousness, tolerance of anthropic habitats, migratory behavior, and trophic level, are associated with the viral infection. From 2017 to October 2020, the H5N1 high-risk areas and cases in wild and domestic birds were few and limited to Asia and Europe. From 2020 to 2025, the rise in H5N1 cases led to rapid expansion of high-risk areas for virus circulation and spread to almost the entire world. The increase in cases occurred within predicted high-risk areas for both wild and domestic birds. The wild bird species most at risk of contracting the viral infection were those that are gregarious, tolerant of anthropic habitats, are non-migratory, and occupy the upper trophic level. Our findings provide insights that could enhance surveillance and conservation efforts aimed at mitigating the adverse impacts of H5N1. These efforts can be optimized by prioritizing high-risk regions and species identified as particularly susceptible to H5N1.
Dataset DOI: 10.5061/dryad.vx0k6dk56
Description of the data and file structure
The data presented here are valid to replicate the analysis performed in the article: Manuscript ID GCB-25-0888 "Wild birds affected by Highly Pathogenic Avian Influenza A(H5N1) worldwide: Epidemiological insights into the recent panzootic"
Files and variables
File: Complete_Data_wildbirds.xlsx
Description: Data on wild birds reported to be infected with H5N1 by WAHIS are valid for replicating risk maps (with and without cases) and the global model.
Variables
epi_event_id: Corresponds to the number of the event assigned by the WOAH (WAHIS).
sero_sub_genotype_eng: Corresponds to the serotype of Avian Influenza Virus.
country: Country that reports the epi event.
region: Region of the country.
Outbreak_start_date: Day the outbreak started.
Epi_unit: Landscape where the outbreak happened. The levels are farm, forest, natural park, backyard, body of water, zoo, village, others, not applicable.
Longitude: Geolocation of the outbreak.
Latitude: Geolocation of the outbreak.
Location_name: City or geographical region where the outbreak started.
wild_type: Whether animals are domestic or wild. The levels are wild, captive, feral.
Species: Species scientific name.
cases: Number of H5N1 cases.
anthropic: Whether the species is tolerant or not tolerant to anthropic habitats. Levels: Yes and No.
migration: Whether a species is migratory or sedentary. Levels: Yes and No.
trophic_level: Trophic level of a species. Levels: C (carnivorous), H (herbivorous), O (omnivores).
gregarious: Whether the species is gregarious or not. Levels: Yes and No.
Empty cells correspond to non-available data.
File: EFSA-Database.xlsx
Description: Data on wild birds reported to be infected with H5N1 by EFSA are valid for replicating the European model.
Variables
Species: Species scientific name.
infection: Whether the species had been infected. Levels: 1 (yes), 0 (no).
anthropic: Whether the species is tolerant or not tolerant to anthropic habitats. Levels: sí (yes) and no (not).
migration: Whether a species is migratory or sedentary. Levels: sí (yes) and no (not).
gregarious: Whether the species is gregarious or not. Levels: sí (yes) and no (not).
Empty cells correspond to non-available data.
File: Complete_Data__poultry_F.xlsx
Description: Data on poultry reported to be infected with H5N1 by WAHIS are valid to replicate maps with cases.
Variables
epi_event_id: Corresponds to the number of the event assigned by the WOAH (WAHIS).
sero_sub_genotype_eng: Corresponds to the serotype of Avian Influenza Virus.
country: Country that reports the epi event.
region: Region of the country.
Outbreak_start_date: Day the outbreak started.
Longitude: Geolocation of the outbreak.
Latitude: Geolocation of the outbreak.
Location_name: City or geographical region where the outbreak started.
cases: Number of H5N1 cases.
Empty cells correspond to non-available data.
Code/software
R program (R Core Team, 2024)
Zonation v.5
Access information
Other publicly accessible locations of the data:
- n/a
Data was derived from the following sources:
- World Organization of Animal Health (WAHIS)
- EFSA (European Food Safety Authority)
