Dataset DOI: 10.5061/dryad.vx0k6dk6g

Description of the data and file structure

• “Dataset 1” comprised 13 mitochondrial protein-coding genes (PCGs) from 140 specimens (IQ-TREE analysis). (Dataset_1_IQ.phy)

• “Dataset 2” comprised 13 mitochondrial PCGs from 140 specimens (MrBayes analysis).

• “Dataset 3” comprised 13 mitochondrial PCGs from 140 specimens plus COI sequences from 22 additional specimens (IQ-TREE analysis). (Dataset_3_IQ.phy)

• “Dataset_1_IQ_partition.txt” and “Dataset_3_IQ_partition.txt” are partition files used for IQ-TREE analyses.

• “Dataset_1_IQ.treefile” and “Dataset_3_IQ.treefile” are the resulting maximum likelihood trees from IQ-TREE.

• “Dataset_2_BI.nex” and associated files (Dataset_2_BI.nex.mcmc, Dataset_2_BI.nex.run1.p, Dataset_2_BI.nex.run2.p, Dataset_2_BI.tre) are the Bayesian inference process files from MrBayes.

• "ASR_value.xlsx" comprised posterior probabilities from ancestral state reconstruction (ASR) analyses of trophic strategy/host association within Eurytomidae, summarized for each node under binary and multistate models.

• ASR_value.xlsx contains two worksheets:

  1) Sheet: “Table 1” (binary ASR; state symbols: a, b)

  2) Sheet: “Table 2” (multistate ASR; state symbols: a–j)

  State definitions

  - Binary coding (Table 1):

  - a = phytophagy / plant association (phytophagous)

  - b = parasitism on animal hosts (entomophagous)

  - Multistate coding (Table 2):

  - a = stem

  - b = seed

  - c = flower bud

  - d = Ficus

  - e = gall (gall-associated)

  - f = Hymenoptera (parasitism on hymenopteran hosts)

  - g = Lepidoptera (parasitism on lepidopteran hosts)

  - h = Coleoptera (parasitism on coleopteran hosts)

  - i = hyperparasitoid (secondary parasitism)

  - j = egg (egg parasitism)

  Column definitions (applies to both sheets unless noted)

  Core MCMC (Markov Chain Monte Carlo) / model columns

  - Iteration: MCMC iteration number recorded in the log (sampled every “Sample Period” iterations).

  - Lh: Log-likelihood (log L) at the recorded iteration.

  - Tree No: Tree index used for the run (e.g., 1 when a single tree is analysed).

  - No Off Parmeters: Number of free (active) parameters in the current reversible-jump model at that iteration.

  - No Off Zero: Number of rate parameters constrained to zero in the current model at that iteration.

  - Model string: Compact reversible-jump model descriptor output by BayesTraits. ‘Z’ indicates a rate parameter estimated (non-zero) in that iteration; ‘0’ indicates a rate fixed to zero.

  Transition-rate columns

  - qXY (e.g., qab, qba, qac …): Instantaneous transition-rate parameter from state X to state Y, sampled by the RJ-MCMC.

  • Table 1 includes qab and qba (two-state model: a ↔ b).

  • Table 2 includes all directed rates among a–j (10-state model).

  Estimated tip-state columns

  - Est <taxon_label> - 1 (e.g., “Est Eurytoma_nr_artemisiae_PDYEURY0015 - 1”):

  Sampled state assignment for the specified terminal taxon at each recorded iteration. Values are the state symbols (a–b in Table 1; a–j in Table 2).

  Marginal posterior probability columns (node reconstructions)

  - Root P(x): Marginal posterior probability that the root is in state x at the recorded iteration (x = a/b for Table 1; x = a–j for Table 2).

  - nodeN P(x): Marginal posterior probability that MRCA node N (node1, node2, …) is in state x at the recorded iteration.

  • Table 1 includes node1–node18.

  • Table 2 includes node1–node23.

  Node numbers correspond to the MRCA node labels defined in the BayesTraits run (see the node-tag definitions and the manuscript/Supporting Information for the mapping of node numbers to clades).

  Reversible-jump hyperparameter

  - RJRates - Mean: Sampled mean value of the reversible-jump (RJ) rates hyperparameter (“RJRates”) reported by BayesTraits at each recorded iteration.