Data and code from: The role of forage quantity and quality in the migration and diet of a northern ungulate during their neonatal period
Data files
May 01, 2026 version files 275.09 KB
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Biomass_Combined.csv
13.93 KB
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Buitrago_TheRoleForage_DietCode.R
10.05 KB
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Buitrago_TheRoleForage_DNALibrary.xlsx
63.70 KB
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Buitrago_TheRoleForage_QuantityQualityCode.R
8.11 KB
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Macro_Combined.csv
13.07 KB
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README.md
5.08 KB
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Spring_RRA_with.csv
14.63 KB
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Summer_RRA_with.csv
21.23 KB
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Table_1_Six_Letter_Code_for_Identified_Taxonomic_Units.pdf
104.21 KB
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Winter_RRA_with.csv
21.10 KB
Abstract
Migration has evolved as a strategy to maximize survival and reproductive success, driven by the search for better resources and/or predator avoidance. For ungulates at high latitudes, the search for higher quality and more abundant forage has been proposed as one of the best explanations of seasonal migrations. However, responses vary among populations, species, and ecosystems. In this study, we examine the forage resources associated with an annual migration of a herd of wood bison (Bison bison athabascae) in northeast Alberta, Canada. Timing of this migration corresponds to the neonatal period in late spring during green up when females have a higher nutritional demand imposed by gestation and maternal care of neonates. The objective of this work was to assess how forage quantity (i.e., biomass) and quality (i.e., crude protein and metabolizable energy, ME) differed between the herd’s core and neonatal ranges while evaluating differences in their diet. Bison diets during winter in the core range were dominated by graminoids and shrubs, while shrubs and forbs were predominant in diets within the neonatal range from late spring through summer. Overall, the neonatal range during spring had significantly greater biomass (p<0.001) of shrubs and forbs compared to the core range during the same season, being 1.7 and 3.8 times higher, respectively. The neonatal range also had comparatively more crude protein and ME (p< 0.001) during this season, with crude protein being 2.7 and 3.2 and ME being 3.0 and 3.7 times greater than in the core range for shrubs and forbs, respectively. Conversely, the core range had higher biomass, crude protein, and ME (p < 0.001) available for graminoids compared with the neonatal range during spring. However, graminoids are not particularly common in their diet during the migration period. Our results suggest that bison migration to the neonatal range, coincident with higher quantity and quality of forage, is important for female wood bison, particularly given their increased post-parturition demands for energy and protein during this critical neonatal period.
Description of the data and file structure
Data files are divided in three groups based on the analysis performed in the paper. The first group encompasses the files Spring_RRA_with.csv, Summer_RRA_with.csv, Winter_RRA_with.csv, and Table_1_Six_Letter_Code_for_Identified_Taxonomic_Units.pdf, and is the data used to perform the bison diet analysis. Each csv file contains data of taxonomic unit names, taxonomic group, number of reads and relative read abundance per sample for each season. The pdf file contains the six-letters code name given to each identified taxonomic unit.
The second group encompasses the files Biomass_Combined.csv and Macro_Combined.csv. This data is used to perform the forage quantity and quality analysis. The first file contains the dry biomass (in grams) found on each sampled location and separated by forage group. The second file contains the amount of protein and metabolizable energy (ME) found on each sampled location and separated by forage group.
Finally, the third group encompasses the file Buitrago_TheRoleForage_DNALibrary.xlsx. This file contains the reference DNA library developed for the paper; DNA sequences, read counts, and taxonomic details per season are specified in each of the document tabs.
R-script for diet and forage qauntity/quality analysis are provided in the files "Buitrago_TheRoleForage_DietCode.R" and "Buitrago_TheRoleForage_QuantityQualityCode.R", respectively.
DATA-SPECIFIC INFORMATION FOR: Spring_RRA_with.csv, Summer_RRA_with.csv, and Winter_RRA_with.csv
- Variable List:
- Sample - Name assigned to the composite sample sent to Jonah Ventures (Boulder, USA) for diet content analysis using DNA metabarcoding
- TaxUnit - Six-letter species code for taxonomic units identified on the relative read abundance analysis. Details can be found on Table 1
- TaxGroup - Functional taxonomic group where each taxonomic unit belongs to. Four categories were defined: Browse, Forb, Other, and Grass
- NumReads - Total number of times the sequence (represented as taxonomic unit) was read within the composite sample
- RRA - Relative read abundance. Total number of reads for the taxonomic unit, divided by the total number of reads among all taxonomic units within the sample
- Missing data codes: NA
- Specialized formats or other abbreviations used: None.
DATA-SPECIFIC INFORMATION FOR: Biomass_Combined.csv and Macro_Combined.csv
- Variable List:
- Transect - Assigned name for the location sampled
- Bio_Shrubs - Dry biomass expressed in grams for browse items
- Bio_Forbs - Dry biomass expressed in grams for forb items
- Bio_Grass - Dry biomass expressed in grams for grass items
- Bio_Sedge - Dry biomass expressed in grams for sedge items
- Bio_Graminoids - Dry biomass expressed in grams for grass and sedge items combined
- Bio_Total - Total dry biomass expressed in grams for all vegetative items in that location
- b_Pro - Total amount of protein expressed in grams from browse items in that location
- b_ME - Total amount of metabolizable energy (expressed as MCal/g) from browse items in that location
- f_Pro - Total amount of protein expressed in grams from forb items in that location
- f_ME - Total amount of metabolizable energy (expressed as MCal/g) from forb items in that location
- g_Pro - Total amount of protein expressed in grams from graminoid items in that location
- g_ME - Total amount of metabolizable energy (expressed as MCal/g) from graminoif items in that location
- Range - Location of the transect, with only two classes: Core and Neonatal ranges
- Missing data codes: NA
- Specialized formats or other abbreviations used: None.
DATA-SPECIFIC INFORMATION FOR: Buitrago_TheRoleForage_DNALibrary.xlsx
- Variable List:
- ESVID - Exact sequence variant unique identifier
- PrimerID - DNA primer used
- Domain - Taxonomic domain matching the identified sequence
- Phylum - Taxonomic phylum matching the identified sequence
- Order - Taxonomic order matching the identified sequence
- Family - Taxonomic family matching the identified sequence
- Genus - Taxonomic genus matching the identified sequence
- Species - Taxonomic species matching the identified sequence
- TaxUnit - Six-letter species code for taxonomic units identified on the relative read abundance analysis. Details can be found on Table 1
- TaxGroup - Functional taxonomic group where each taxonomic unit belongs to. Four categories were defined: Browse, Forb, Other, and Grass
- Sequence - nucleotide sequence variant details
- Winter/Spring/Summer 1 to 12 - Sample identifier for each season. Values represent the number of times a given sequence was read by the sequencer
- Winter/Spring/Summer ReadSum - Total sum of number of times a given sequence was read by the sequencer
- Missing data codes: NA
- Specialized formats or other abbreviations used: None.
