Trophic discrimination of amino acid-specific nitrogen stable isotopes in raptor nestlings: implications for estimating trophic position
Data files
Apr 08, 2025 version files 152.90 KB
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CSIA_Bulk.csv
12.30 KB
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CSIA_camdata.csv
132.98 KB
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preytab_CSIA.csv
1.83 KB
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RAPTOR_CSIA_GYRF.csv
2.36 KB
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README.md
3.44 KB
Abstract
Bulk stable isotope analysis of carbon and nitrogen is commonly used to assess trophic relationships among organisms in a wide variety of ecosystems. However, compound-specific stable isotope analysis of individual amino acids may be a more accurate approach for resolving food web structure. We compared the applicability of bulk and compound specific methods in an Arctic tundra ecosystem. Specifically, we determined bulk δ13C and δ15N, as well as amino acid specific δ15N, in red blood cells from nestling raptors and muscle samples from common prey species. We subsequently estimated bulk and amino-acid specific trophic discrimination factors (TDFs) for nitrogen in gyrfalcons (Falco rusticolus) using high-precision diet estimates from nest cameras to compare against TDFs in the literature. Although bulk δ15N values of secondary consumers were enriched relative to primary consumers, overlap occurred across groups and greater separation was apparent using δ15N of amino acids. Comparing red blood cell δ15N values to prey muscle δ15N values, we found that bulk TDFs and compound-specific TDFs for trophic amino acids were lower than values from the literature that have typically been used to estimate trophic position. Our findings suggest that while δ15N values of amino acids have the potential to improve our assessment of trophic relationships, the assumption that amino acid specific TDFs remain constant across all consumers and diet types is violated for raptor nestlings, such that consumer-specific TDFs must be calculated to accurately estimate trophic position. Use of “universal” TDFGlu-Phe values will result in an underestimate of nestling trophic level. Diet estimates for nestlings based on stable isotope mixing models that use adult TDFs for will be inaccurate.
Trophic discrimination of amino acid-specific nitrogen stable isotopes in raptor nestlings: implications for estimating trophic position
https://doi.org/10.5061/dryad.wwpzgmstq
Description of the data and file structure
These datasets include both bulk and compound-specific stable isotope values from a variety of species collected in the Seward Peninsula in Alaska in .csv format.
Files and variables
For the following CSV’s, there are quite a few repeated variables and as such they are only defined in the data sheet they first appear in. Furthermore, some of the variable names are self-explanatory and as such are not defined. Finally, some column names were only used for record-keeping purposes and are not relevant to analysis. These column names are thus omitted to avoid confusion.
File: CSIA_Bulk.csv
Description: Dataset for compiled bulk and compound specific stable isotope values across all species.
** Missing values denoted as NA in this datasheet
Variables
- UCD_ID: ID assigned by UC Davis
- id:
- nest_id:
- species:
- hatch_date:
- year:
- category: A, M, P, S, T or R for Arctic Ground Squirrel, Microtine Rodents, Passerine, Shorebirds, Ptarmigan, or Raptors, respectively.
- Ala: Alanine (permil)
- Asp: Aspartic Acid (permil)
- Glu: Glutamine (permil)
- Gly: Glycine (permil)
- His: Histidine (permil)
- Hyp: Hydroxyproline (permil)
- Ile: Isoleucine (permil)
- Leu: Leucine (permil)
- Lys: Lysine (permil)
- Met: Methionine (permil)
- Phe: Phenylalanine (permil)
- Pro: Proline (permil)
- Ser: Serine (permil)
- Thr: Threonine (permil)
- Tyr: Tyrosine (permil)
- Val: Valine (permil)
- d15N: Delta 15 N (permil)
- d13C: Delta 13 C in (permil)
File: CSIA_camdata.csv
Description: Data from camera traps nests describing prey type consumed at each nest. *Missing values are not present except for in the comments, where they are denoted with a “-“.
Variables
- nest_id:
- year:
- age_precise: Exact age as according to the hour
- brood_size:
- photo: photo number
- species:
- class: A, M, P, S, T or R for Arctic Ground Squirrel, Microtine Rodents, Passerine, Shorebirds, Ptarmigan, or Raptors, respectively.
- biomass_total_alt: Estimated biomass for each species of prey.
- time:
- sex:
- consumed: Percentage of prey item that was consumed by nestling
- corrected_biomass_alt: Percentage of prey item that was consumed by nestling
- A: Binary 0/1 Arctic Ground Squirrel,
- M: Binary 0/1 Microtine Rodents
- O: Binary 0/1 Other
- P: Binary 0/1 Passerine
- S: Binary 0/1 Shorebirds
- T: Binary 0/1 Ptarmigan
- comments:
File: preytab_CSIA.csv
Description: Summarized compound-specific data of amino acids across prey species grouped into one of five categories.
Variables
- category: A, M, P, S, T for Arctic Ground Squirrel, Microtine rRodents, Passerine, Shorebirds, Ptarmigan, or Raptors, respectively.
- n: number of individuals per category
*** SD stands for standard deviation.
File: RAPTOR_CSIA_GYRF.csv
Description: Compound specific data of amino acids across all juvenile raptors.
Variables
See above variables
Code/software
R (V 4.2.1) and RStudio (2024.04.2+764) were used to run the analysis. Base R, as well as the following packages were used.
- ggplot2
- plyr
- dplyr
- lme4
- lmerTest
- emmeans
- car
- agricolae
- tidyr