Data from: In vivo changes in zebrafish anesthetic sensitivity in response to the loss of kif5Aa are associated with the alteration of mitochondrial motility
Data files
Jun 01, 2026 version files 7.92 GB
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2hr_behavior_data_WT_Kif.zip
4.79 MB
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Mito_Motility_Data.zip
7.91 GB
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README.md
4.68 KB
Abstract
Anesthetic and sedative drugs are small compounds known to bind to hundreds of proteins. One intriguing binding partner of propofol is the motor domain of a neuronal mitochondrial transport kinesin, kif5A. Here, we used zebrafish wild type (WT) and kif5Aa knockout (KO) larval behavioral assays to assess anesthetic sensitivity and combined that with zebrafish primary neuronal cell culture to probe for alterations in mitochondrial motility. We found that the loss of kif5Aa increases behavioral sensitivity to propofol and etomidate, with etomidate hypersensitivity greater than propofol. In contrast, kif5Aa KO animals were resistant to the behavioral effects of dexmedetomidine. Finally, WT and kif5Aa KO larvae responded similarly to the behavioral effects of ketamine. Propofol inhibited the anterograde motility of mitochondria in WT zebrafish neurons, while etomidate inhibited mitochondrial motility in both anterograde and retrograde directions; neither drug altered mitochondrial motility in the kif5Aa knockout (KO) neurons. In contrast, dexmedetomidine enhanced retrograde mitochondrial motility in both WT and kif5Aa KO animals. Finally, ketamine had little significant effect on mitochondrial motility in either mutant or WT animals. These data demonstrate that each anesthetic/sedative drug affects the motor protein machinery uniquely and is associated with unique changes in behavior. Understanding how different anesthetic compounds alter neuronal motor proteins will be important in defining how anesthetics alter neuronal signaling and energetic dynamics.
Dataset DOI: 10.5061/dryad.x3ffbg808
Description of the data and file structure
There are two major types of experiments performed in this dataset: Mito_Motility_Data.zip.
1) "2hr_behavior_data_WT_Kif.zip" This data uses 5-day-old zebrafish larvae and measures spontaneous movement and the distance moved to an acoustic tap stimulus over 2 hours. The original data files are too large for this database (over 10 TB). However, the summary of movement is provided in Excel files in the file labeled “2hr behavior data WT Kif”.
a. In the file “Individual drug data files”, there are all the original Excel files.
i. Kif dex data is the files for WT and kif5Aa mutants for the different doses of dexmedetomidine. The data is labeled Statistics-KifDex, followed by the date the experiment was conducted. Individual experiments were done once per day. Following the date is a number. Files 0 (or the one without a number) are the spontaneous movement files. 0 = SM at 30 min, 1 = SM at 60 min, 2 = SM at 90 min, 3 = SM at 120 min. Files 4-7 are Tap stimulus (elicited movement EM). 4 = EM at 60 min, 5 = EM at 60 min, 6 = EM at 90 min, 7 = EM at 120 min. Within the excel file tells the dose in mM of the drug.
ii. Kif etomidate data and kif5aa prop and etom have the behavioral data for both propofol and etomidate. The concentration of the drug is within the Excel files.
iii. Kif ketamine data has the Excel data for ketamine.
b. The Kif prism summary files have the statistics for each of the behavior studies.
i. Each drug, prop (propofol), dex (dexmedetomidine), ket (ketamine), etom (etomidate), has a tap file (for elicited movement) and SM (for spontaneous, aneural movement) over time, 30 min-120 min. Within the prop files we added 2 doses of 2-DG (glycolysis inhibitor) but did not add this data to the paper. Doses for the drugs are listed within the Prism files.
ii. The folder labeled Unpublished drugs prism files contains data for isoflurane, sevoflurane,e and trica,ine, which we did not publish in this paper.
2) Mitochondrial motility assays. We cultured primary neurons from the brains of 5-day-old zebrafish larvae. The neurons were imaged using a spinning disc confocal microscope at 63x to watch mitochondria along CNS neurons. The mitochondria expressed roGFP. The neurons were imaged every 3 seconds for 5 minutes.
a. “Mitochondrial Movement raw data” contains all the data for the mitochondrial movement studies.
i. Each experiment was labeled by the date the experiment was performed. Within that folder are the movies captured (in AVI format). The label of the movie says the genotype (wt or kif), the dose of the drug, μg/ug, and the drug given. For example, the wt_mito_3umproshowsis wild-type neurons looking at mitochondria exposed to 3 mM of propofol. The number at the end is the neuron number imaged (usually 1-10)
1. For each movie, a kymograph was made for at least 1 axon (although there can be more than 1 axon). The results file has the mitochondria for each mitochondria within the axons of the movie. If there is a number (example – Results from 1-Kymograph . . ,.), that means there is more than 1 axon imaged in the movie. The results file name also contains the genotype, dose of drug and drug used.
b. “2-way anova prism files” file contains the prism files used for statistical analysis of the mitochondrial movement. The files are separated by anterograde and retrograde distance moved (DistMov) and velocity. There are also files fthe or percent of mitochondria that moved (PercentMove) and total distance moved (TotalDist) for the drugs.
i. The file “wo 0values data” has all the same movement analysis with all the mitochondria that had no movement removed from the analysis.
c. The “look at my healthy neurons” file is images in tif format of the cultured neurons, both with a white field and with the GFP overlay to show the mitochondria.
Code/software
GraphPad Prism was used to analyze the data. Any program that will open a spreadsheet, such as Excel is recommended.
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- N/A
Zebrafish husbandry
All zebrafish experiments complied with the University of Pennsylvania Institutional Animal Care and Use Committee (IACUC). The adult zebrafish were maintained in an aquatic facility overseen by the University Laboratory Animal Resources (ULAR) at the University of Pennsylvania.
All zebrafish were maintained at 28 degree C with a 13-11 light-dark cycle as previously described. Adult fish were maintained using standard husbandry conditions. Knockout (KO) and wild-type (WT) siblings were maintained in the same conditions until experimentation.
Genotyping the kif5Aa KO line
Genomic DNA was obtained from adult animals using the fin-clipping method. The PCR identifying the kif5Aasa7168 KO animals was run using previously described primers and digested using Dra III.
kKif5Aasa7168heterozygous zebrafish were mated, and before behavioural testing, the larvae were separated based on known visual phenotypes: loss of the swim bladder and increased pigmentation. “WT” was a combination of WT and heterozygous animals, as they were indistinguishable.
The kif5Aa heterozygous line was outcrossed into a stable Tg(actb1:Has.GLRX:roGFP) line (available on Zfin.com under the name p312Tg, ID name ZDB-ALT-140508-36). In this line t, the roGFP is targeted to the mitochondria and labels all mitochondria within the zebrafish.
Drug exposures
We tested four sedative/anesthetics: propofol, etomidate, dexmedetomidine, and ketamine. Each drug was diluted into E3 embryo water for the behavior experiments described previously. Briefly, propofol was diluted to 100 mM from a 100 mM DMSO stock in E3 by sonicating for 5 minutes (min); absorbance at 270nm was used to confirm the concentration. Etomidate and dexmedetomidine were solubilized directly by vortexing. Finally, ketamine was diluted in an E3 with 55 mM HEPES at a pH of 8, which is required for improved uptake by the larvae.
For cell culture, all drugs were initially diluted to a 2x concentration using 1x PBS. This was then diluted to the final drug concentration in complete cell culture media to ensure adequate nutrition for the cells.
Zebrafish 5 dpf behavioural assay
Behavior experiments were performed as previously described. Briefly, we used the DanioVision behavioral system with EthoVision software (Noldus) to measure the distance the WT and kif5Aa KO larvae moved spontaneously (SM) over 4 min or in 1 second after an elicited acoustic stimulus (EM). The experiments were 2 hours within the dark enclosure of the behaviour system, with the EM at the highest setting every 30 minutes. All experiments used 96-well glass plates (Chemglass Life Sciences, CG-1910) at 28 degree C.
Primary zebrafish neuronal cell culture
This protocol is based on a previously described zebrafish neuronal cell culture assay. Briefly, we used a 96-well tissue culture plate with a glass-like polymer coverslip bottom (Cellvis, P96-1.5P) coated with Entactin-Collagen-Laminin (EMD Millipore, 08-110) at 10-20 mg/mL and stored at 4 degree C overnight.
Twenty 5 dpf zebrafish WT siblings and kif5Aa KO larvae containing the Grx ro-GFP2 were euthanized on ice until the heart stopped beating. Brains were dissected and placed in 500 mL Hank's base salt solution with 1% penicillin/streptomycin on ice. 200 mL of Accutase (Sigma, A6964) was added for dissociation and incubated for 10 min in a 37 degree C water bath. Brains were triturated using a glass pipette for 2-4 min or until there were few visible clumps of cells. This was key to decreasing aggregation and promoting attachment and axon outgrowth during cell culturing. The dissociation reaction was stopped using 700 mL of complete media. Complete media consisted of 0.22 mm sterile-filtered Leibovitz-15, 2.5mM Glutamax I, 15 ng/mL epidermal growth factor, 10% fetal bovine serum, 1% penicillin/streptomycin, and 5% zebrafish embryo extract. The embryo extract was created as previously described.
The sample was centrifuged at 1500 RPM for 6 min at 4 degree C. The supernatant was discarded,d and 100-125 mL of complete media was added to resuspend the pellet. The cell mixture was plated using 50-75 mL per well. The cells were incubated at 28 degree C for 2 days.
Imaging
Neurons were imaged using a Leica DMI4000 with a Yokagawa CSU-X1 spinning disk confocal attachment at 63x.
The anaesthetic concentration chosen was the EC50s previously determined: propofol 3 mM, etomidate 30 mM, dexmedetomidine 10 nM, and ketamine 130 mM. The cells were incubated in the drug for at least 30 min before imaging. Neurons that could be traced back to a specific cell body were imaged every 3 seconds for 5 minutes for a total of 101 images (initial image plus imaging for the next five minutes). Five to ten cells were imaged per well.
An open-source ImageJ plugin, KymoToolBox, defines mitochondrial motility. Supplemental Table 1 is a summary of the mitochondria traced. Briefly, each movie contained a range of 1-6 axons. The axons were highlighted, and a kymograph was created, on which individual mitochondria were traced. The number of traceable mitochondria varied between movies; therefore, the range of mitochondria traced is given in Supplemental Table 1. Any movie with fewer than 5 traceable mitochondria was discarded. ImageJ was then able to calculate the distance moved for the mitochondria. Total mitochondrial movement is herein defined as any movement, retrograde plus anterograde, including zero movement. No minimum motility down the axon was used.
Statistics
For behavior studies, the distance moved for 8-12 larvae per drug concentration per genotype was averaged and counted as a single experimental value (n). The experiment was performed at least 4 times on separate days to ensure technical and biological replication. Each animal was exposed to a single drug and not reused. For the baseline movement assays, 40-41 experiments at 30 minutes were analyzed, and significance was tested using the Mann-Whitney test for nonparametric data. Hill curves were created using 6-8 drug concentrations, including a no-drug (ND) control. The distance moved was normalized using the ND as 100% movement. Hill curves were created using GraphPad Prism. As with prior studies, the Hill curves were constrained to a top value of 100% and a bottom ovalue f 0%. The EC50s with 95% confidence intervals (CI) were calculated and plotted. EC50 comparison p-values were determined using a sum of squares F test.
All experiments were performed at least in triplicate for the mitochondrial motility assays. The motility data were,e in most cases, normally distributed. Therefore, a two-way ANOVA using Bonferroni’s correction for multiple comparisons determined significance. For all groups, significance is labeled: not significant (n.s., p > 0.05), p ≤ 0.05 (), p ≤ 0.01 (), p ≤ 0.001 (), p ≤ 0.0001.
