Data from: Genomic life-history traits mediate the impacts of habitat loss and nutrient availability on fragmented grassland communities
Data files
Mar 16, 2026 version files 269.30 KB
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Environmental_data.xlsx
39.56 KB
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Genomic_life-history_trait_data.xlsx
21.75 KB
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Plant_community_data.xlsx
205.67 KB
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README.md
2.33 KB
Abstract
Habitat loss and nutrient enrichment are major drivers of plant species declines. However, local extinction risks vary widely and are shaped by life-history trait syndromes. Genomic life-history traits, which are simple, stable, and widely available, offer a promising yet underexplored approach to improving extinction risk assessments and informing conservation efforts. Using a spatial comparison approach, we analysed 256 semi-natural grassland plant communities in four Swedish agricultural landscapes to examine whether genomic life-history traits such as ploidy, genome size, and chromosome number mediate differences in plant community diversity and composition along independent gradients of grassland fragment size and phosphorus availability. Our findings show that plant diversity and community composition are increasingly dominated by larger genome species both as grassland fragments become smaller and as more phosphorus becomes available. While all genomic life-history traits proved important, ploidy plays a particularly significant role in explaining differences between observed plant communities. Ploidy-mediated deterministic plant community changes along both environmental gradients. Diploid species are especially vulnerable to local extinction, whereas polyploids demonstrate resilience to habitat loss and benefit from increased phosphorus availability, likely leading to the competitive exclusion of diploids. By revealing how genomic traits shape plant community responses to land-use change and nutrient pollution—two key drivers of extinction—our study introduces a predictive, genomic trait-based framework for assessing local extinction risks in fragmented landscapes.
Dataset DOI: 10.5061/dryad.x95x69q0h
Description of the data and file structure
Plant community (presence-absence), biotic and abiotic environmental and genomic life-history trait data associated with 256 grassland 1m x 1m plots and 257 vascular plant species, collected in four plots across each of 16 grasslands patches, replicated in four 5 km x 5 km landscapes in southern Sweden.
Files and variables
File: Environmental_data.xlsx
Description: Matrix of 256 sites x 15 biotic and abiotic environmental variables collected across in 4 plots, in each of 16 semi-natural grassland patches, replicated in four 5 km x 5 km landscapes in southern Sweden
Variables
- Landscape: Vättern, Kinnekulle, Aspa or Jordtorp
- Grassland patch: 1 - 16
- Plot: 1 - 4
- Bedrock type: acid or calcareous
- id: lab id used
- Soil sample weight: g
- C: % soil carbon
- N: % soil nitrogen
- C/N: carbon-nitrogen ratio
- pH KCl- pH of potassium chloride
- Plant-available P: mg/kg soil
- Grassland patch area: square meters
- Vegetation height: cm
- Grazed: yes (1) or no (0)
- Vegetation cover: per plot, in %
File: Genomic_life-history_trait_data.xlsx
Description: Matrix of 257 species x 3 genomic trait variables extracted from Index to Plant Chromosome Numbers (http://www.tropicos.org/Project/IPCN), Royal Botanic Gardens Kew Database (http://cvalues.science.kew.org) and the Database of the Czech Flora and Vegetation (Pladias; http://www.pladias.cz)
Variables
- Ploidy: number of chromosome pairs
- Chromosome number: total number of chromosomes contained in a cell
- Genome size: size of the genome, in million base pairs
File: Plant_community_data.xlsx
Description: 256 sites x 257 species matrix indicating presence-absence of grassland species collected across in 4 plots, in each of 16 semi-natural grassland patches, replicated in four 5 km x 5 km landscapes in southern Sweden
Variables
- Presence-absence of 257 plant species across 256 1m x 1m grassland plots.
