Targeted fish removals enhance multidimensional native diversity within freshwater protected areas
Data files
Jul 09, 2026 version files 23.68 KB
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Fasta_S1_Changhu_Lake.nwk
1.54 KB
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Fasta_S2_Honghu_Lake.nwk
1.60 KB
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Fasta_S3_Wuhu_Lake.nwk
1.44 KB
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Fasta_S4_Caohai_Lake.nwk
822 B
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Fasta_S5_Erhai_Lake.nwk
1.09 KB
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README.md
10.86 KB
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Table_S1.csv
6.32 KB
Abstract
Freshwater ecosystems are hotspots of biodiversity and contribute significantly to food security. Yet freshwater habitats throughout the world remain plagued by overfishing, which depletes populations and diminishes provisioning of ecosystem services. There is growing interest in the use of freshwater protected areas or ‘FPAs’ (whereby strict fishing bans are often deployed) to promote ecosystem recovery. Yet empirical evidence on the efficacy of FPAs indicates many recoveries are complicated by the presence of non-native species, which ironically also benefit from enhanced management. To evaluate effects of targeted fish removals (TFRs) under fully implemented FPAs, we conducted exhaustive field surveys across five Chinese lakes with and without removal efforts, and assessed multiple dimensions of fish assemblage diversity. Results showed multidimensional diversity metrics for native fishes improved significantly in lakes following TFRs (e.g., non-native fish removals in invasion hotspots), while these same metrics declined in control lakes. Moreover, TFRs strengthened top-down control and helped mitigate impacts of lake eutrophication through a series of trophic cascades. Taken together, our findings demonstrate how active fish management can substantially enhance the potential benefits of FPAs, and quicken the pace of ecological recovery in freshwaters.
https://doi.org/10.5061/dryad.xd2547dxt
GENERAL INFORMATION
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Title of Dataset: Targeted fish removals enhance multidimensional native diversity within freshwater protected areas
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Author Information
A. Principal Investigator Contact Information
Name: Zhice Liang
Institution: Institute of Hydrobiology
Address: Wuhan, China
Email: liangzhice@ihb.ac.cnB. Associate or Co-investigator Contact Information
Name: Chuanbo Guo
Institution: Institute of Hydrobiology
Address: Wuhan, China
Email: guocb@ihb.ac.cn -
Date of data collection (single date, range, approximate date): In the middle and lower Yangtze River Basin FPAs (Changhu Lake, Honghu Lake, and Wuhu Lake), field surveys were conducted July and October 2022, and January, April, July, and October 2023, as well as January and April 2024. In the Erhai and Caohai Lake FPAs, surveys were conducted during January, April, July, and October 2022, and January, April, July, and October 2023.
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Geographic location of data collection: The selected lakes include three located in the middle and lower Yangtze River Basins: Changhu Lake, Honghu Lake, and Wuhu Lake; and two on the Yunnan-Guizhou Plateau: Caohai Lake and Erhai Lake.
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Information about funding sources that supported the collection of the data: This work was financially supported by National Natural Science Foundation of China (No. 32172980), the Natural Science Foundation of Hubei Province (No. 2023000304), the National Key Research and Development Program of China (No. 2023YFD2400900), and the earmarked fund for China Agriculture Research System (CARS-45). Zhice Liang was funded by China Scholarship Council (No. 202304910486) to study abroad. Andrew L. Rypel was supported by the University of California, Davis Agricultural Experiment Station grant no. CA-D-WFB-2098-H and by the Peter B. Moyle and California Trout Endowment for Coldwater Fish Conservation. We are grateful to Prof. Donald A. Jackson for his invaluable comments and suggestions on the manuscript. We thank Bo Xv, Hang Zhang, Jiaming Tu, Jiangqianhui Qi, Hanwen Zhang, Yuxing Ma, Senyang Wang, Yu, Yang, Zihao Yuan and Hanwen Zhang for their help in sampling.
SHARING/ACCESS INFORMATION
- Licenses/restrictions placed on the data: CC0 1.0 Universal (CC0 1.0) Public Domain
- Links to publications that cite or use the data: Liang, Z., Rypel, A. L., Liu, J., Guo, C. (2026). Targeted fish removals enhance multidimensional native diversity within freshwater protected areas. Journal of Applied Ecology.
- Links to other publicly accessible locations of the data: None
- Links/relationships to ancillary data sets: None
- Was data derived from another source? No
If yes, list source(s): NA - Recommended citation for this dataset:
- Liang, Z., Guo, C. (2025). Data from: Targeted fish removals enhance multidimensional native diversity within freshwater protected areas. Dryad Digital Repository. DOI: 10.5061/dryad.xd2547dxt
DATA & FILE OVERVIEW
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File List:
A) Table S1: Functional traits for each identified fish species; Table_S1.csv
B) Fasta S1: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Changhu Lake; Fasta_S1_Changhu_Lake.nwkC) Fasta S2: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Honghu Lake; Fasta_S2_Honghu_Lake.nwk
D) Fasta S3: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Wuhu Lake; Fasta_S3_Wuhu_Lake.nwk
E) Fasta S4: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Caohai Lake; Fasta_S4_Caohai_Lake.nwk
F) Fasta S5: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Erhai Lake; Fasta_S5_Erhai_Lake.nwk
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Relationship between files, if important: None
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Additional related data collected that was not included in the current data package: None
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Are there multiple versions of the dataset? NO
A. If yes, name of file(s) that was updated: NA
i. Why was the file updated? NA
ii. When was the file updated? NA#########################################################################
DATA-SPECIFIC INFORMATION FOR: Table S1: Functional traits for each identified fish species
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Number of variables: 16
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Number of cases/rows: 51
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Variable List:
- Fish species
- Max length (Maximum standard length that can be achieved during lifecycle, mm)
- Relative head length (The ratio of head length to standard length, mm)
- Relative eye size (The ratio of the diameter of the eye to the body height passing through the center of the eye, mm)
- Relative snout length (The ratio of snout length to head length, mm)
- Relative head depth (The ratio of the body height passing through the center of the eye to body depth, mm)
- Pectoral fin position (The ratio of the distance from the pectoral fin to the anterior end of the fish to the standard length, mm)
- Swimming factor (The ratio of caudal peduncle depth to caudal fin depth, mm)
- Relative body depth (The ratio of body height to body length, mm)
- Rheophily (1- Rheophilic, 2- Limnophilic, 3- Eurytopic, categorical variable)
- Position of the water column (1- Benthic, 2- Benthopelagic, 3- Pelagic, categorical variable)
- Life span (1- (≤ 10), 2- (10- 20), 3- (> 20), categorical variable)
- Dietary preferences (1- Filter feeding, 2- Carnivorous, 3- Herbivorous, 4- Omnivorous, categorical variable)
- Spawning mode (1- Batch spawning, 2- Total spawning, categorical variable)
- Migration type (1- Reproductive migration, 2- Forage migration, 3- Overwinter migration, 4- Resident fish species, categorical variable)
- Reproductive mode (1- Buoyant eggs, 2- Floating eggs, 3- Adhesive/sinking eggs, 4- Other, categorical variable)
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Missing data codes: None
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Specialized formats or other abbreviations used: None
#########################################################################
DATA-SPECIFIC INFORMATION FOR: Fasta S1: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Changhu Lake.
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Variable List:
- Fish species
- Comparative sequences of the mitochondrial COⅠ gene
- Branch Lengths
- Bootstrap values
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Missing data codes: None
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Specialized formats or other abbreviations used: None
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File type and software suggestion for opening and viewing: The file is in FASTA format (plain text sequence file). It can be opened with any text editor (e.g., Notepad, VS Code, Sublime Text). For sequence alignment and phylogenetic analysis, it can also be viewed and processed with common bioinformatics software such as MEGA, UGENE, AliView, BioEdit, or programming libraries such as Biopython and Bioconductor.
#########################################################################
DATA-SPECIFIC INFORMATION FOR: Fasta S2: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Honghu Lake.
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Variable List:
- Fish species
- Comparative sequences of the mitochondrial COⅠ gene
- Branch Lengths
- Bootstrap values
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Missing data codes: None
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Specialized formats or other abbreviations used: None
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File type and software suggestion for opening and viewing: The file is in FASTA format (plain text sequence file). It can be opened with any text editor (e.g., Notepad, VS Code, Sublime Text). For sequence alignment and phylogenetic analysis, it can also be viewed and processed with common bioinformatics software such as MEGA, UGENE, AliView, BioEdit, or programming libraries such as Biopython and Bioconductor.
#########################################################################
DATA-SPECIFIC INFORMATION FOR: Fasta S3: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Wuhu Lake.
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Variable List:
- Fish species
- Comparative sequences of the mitochondrial COⅠ gene
- Branch Lengths
- Bootstrap values
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Missing data codes: None
-
Specialized formats or other abbreviations used: None
-
File type and software suggestion for opening and viewing: The file is in FASTA format (plain text sequence file). It can be opened with any text editor (e.g., Notepad, VS Code, Sublime Text). For sequence alignment and phylogenetic analysis, it can also be viewed and processed with common bioinformatics software such as MEGA, UGENE, AliView, BioEdit, or programming libraries such as Biopython and Bioconductor.
#########################################################################
DATA-SPECIFIC INFORMATION FOR: Fasta S4: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Caohai Lake.
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Variable List:
- Fish species
- Comparative sequences of the mitochondrial COⅠ gene
- Branch Lengths
- Bootstrap values
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Missing data codes: None
-
Specialized formats or other abbreviations used: None
-
File type and software suggestion for opening and viewing: The file is in FASTA format (plain text sequence file). It can be opened with any text editor (e.g., Notepad, VS Code, Sublime Text). For sequence alignment and phylogenetic analysis, it can also be viewed and processed with common bioinformatics software such as MEGA, UGENE, AliView, BioEdit, or programming libraries such as Biopython and Bioconductor.
#########################################################################
DATA-SPECIFIC INFORMATION FOR: Fasta S5: Comparative sequences of the mitochondrial COⅠ gene (cytochrome c oxidase subunit Ⅰ) for each identified fish species in Erhai Lake.
- Variable List:
- Fish species
- Comparative sequences of the mitochondrial COⅠ gene
- Branch Lengths
- Bootstrap values
- Missing data codes: None
- Specialized formats or other abbreviations used: None
- File type and software suggestion for opening and viewing: The file is in FASTA format (plain text sequence file). It can be opened with any text editor (e.g., Notepad, VS Code, Sublime Text). For sequence alignment and phylogenetic analysis, it can also be viewed and processed with common bioinformatics software such as MEGA, UGENE, AliView, BioEdit, or programming libraries such as Biopython and Bioconductor.
