Data for: Three-dimensional characterization of osteocyte volumes at multiple scales, and its relationship with bone biology and genome evolution in ray-finned fishes
Data files
Mar 27, 2020 version files 30.86 MB
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Abramis_brama_MNHNICOS00756_dentary_max.csv
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Abramis_brama_MNHNICOS00756_dentary_min.csv
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Acipenser_gueldenstaedtii_MNHNICOS01526_dentary_max.csv
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Acipenser_gueldenstaedtii_MNHNICOS01526_dentary_min.csv
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Alosa_pseudoharengus_UMMZ187300_dentary_max.csv
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Alosa_pseudoharengus_UMMZ187300_dentary_min.csv
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Alosa_pseudoharengus_UMMZ187300_rib_max.csv
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Alosa_pseudoharengus_UMMZ187300_rib_min.csv
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Amia_calva_OUMNH21648_dentary_max.csv
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Amia_calva_OUMNH21648_dentary_min.csv
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Anguilla_anguilla_MNHNICOSD35_dentary_max.csv
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Anguilla_anguilla_MNHNICOSD35_dentary_min.csv
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Arapaima_gigas_MNHNICOS00557_dentary_max.csv
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Arapaima_gigas_MNHNICOS00557_dentary_min.csv
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Arapaima_gigas_MNHNICOS00557_rib_max.csv
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Arapaima_gigas_MNHNICOS00557_rib_min.csv
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Ariopsis_felis_UMMZ223241_dentary_max.csv
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Ariopsis_felis_UMMZ223241_dentary_min.csv
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Ariopsis_felis_UMMZ223241_rib_max.csv
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Ariopsis_felis_UMMZ223241_rib_min.csv
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Atractosteus_tropicus_MNHNICOSPB901_dentary_max.csv
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Atractosteus_tropicus_MNHNICOSPB901_dentary_min.csv
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Catostomus_commersonii_UMMZ178869_dentary_max.csv
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Catostomus_commersonii_UMMZ178869_dentary_min.csv
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Catostomus_commersonii_UMMZ178869_rib_max.csv
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Catostomus_commersonii_UMMZ178869_rib_min.csv
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Chirocentrus_dorab_UMMZ220543_dentary_max.csv
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Chirocentrus_dorab_UMMZ220543_dentary_min.csv
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Chirocentrus_dorab_UMMZ220543_rib_max.csv
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Chirocentrus_dorab_UMMZ220543_rib_min.csv
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Chitala_chitala_UMMZ193675_dentary_max.csv
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Chitala_chitala_UMMZ193675_dentary_min.csv
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Conger_conger_MNHNICOSSP-24_dentary_max.csv
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Conger_conger_MNHNICOSSP-24_dentary_min.csv
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Conger_conger_MNHNICOSSP-24_rib_max.csv
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Conger_conger_MNHNICOSSP-24_rib_min.csv
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Coregonus_reighardi_UMMZ172476_dentary_max.csv
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Coregonus_reighardi_UMMZ172476_dentary_min.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_anterior_max.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_anterior_min.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_posterodorsal_max.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_posterodorsal_min.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_posteroventral_max.csv
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Cyprinus_carpio_MNHNICOS00610_dentary_posteroventral_min.csv
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Cyprinus_carpio_MNHNICOS00610_dorsalspine_max.csv
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Cyprinus_carpio_MNHNICOS00610_dorsalspine_min.csv
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Cyprinus_carpio_MNHNICOS00610_frontal_max.csv
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Cyprinus_carpio_MNHNICOS00610_frontal_min.csv
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Cyprinus_carpio_MNHNICOS00610_maxilla_max.csv
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Cyprinus_carpio_MNHNICOS00610_maxilla_min.csv
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Cyprinus_carpio_MNHNICOS00610_opercle_max.csv
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Cyprinus_carpio_MNHNICOS00610_opercle_min.csv
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Cyprinus_carpio_MNHNICOS00610_pelvicbone_max.csv
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Cyprinus_carpio_MNHNICOS00610_pelvicbone_min.csv
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Cyprinus_carpio_MNHNICOS00610_pharyngealbone_max.csv
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Cyprinus_carpio_MNHNICOS00610_pharyngealbone_min.csv
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Cyprinus_carpio_MNHNICOS00610_rib_max.csv
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Cyprinus_carpio_MNHNICOS00610_rib_min.csv
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Cyprinus_carpio_MNHNICOS00610_vertebra_max.csv
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Cyprinus_carpio_MNHNICOS00610_vertebra_min.csv
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Elops_saurus_UMMZ189366_dentary_max.csv
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Elops_saurus_UMMZ189366_dentary_min.csv
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Erpetoichthys_calabaricus_OOcoll_dentary_max.csv
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Erpetoichthys_calabaricus_OOcoll_dentary_min.csv
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Galeichthys_feliceps_MNHNICOS00875_dentary_max.csv
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Galeichthys_feliceps_MNHNICOS00875_dentary_min.csv
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Gymnotus_carapo_UMMZ207893_dentary_max.csv
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Gymnotus_carapo_UMMZ207893_dentary_min.csv
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Gymnotus_carapo_UMMZ207893_rib_max.csv
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Gymnotus_carapo_UMMZ207893_rib_min.csv
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Gyrinocheilus_aymonieri_UMMZ195925_dentary_max.csv
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Gyrinocheilus_aymonieri_UMMZ195925_dentary_min.csv
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Hoplias_malabaricus_MNHNICOS00631_dentary_max.csv
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Hoplias_malabaricus_MNHNICOS00631_dentary_min.csv
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Lepisosteus_oculatus_UMMZ178806_dentary_max.csv
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Lepisosteus_oculatus_UMMZ178806_dentary_min.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_anterior_max.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_anterior_min.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_posterodorsal_max.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_posterodorsal_min.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_posteroventral_max.csv
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Megalops_cyprinoides_MNHNICOS00987_dentary_posteroventral_min.csv
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Muraenesox_cinereus_MNHNICOS00286_dentary_posteroventral_max.csv
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Muraenesox_cinereus_MNHNICOS00286_dentary_posteroventral_min.csv
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Oncorhynchus_clarkii_UMMZ191615_dentary_max.csv
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Oncorhynchus_clarkii_UMMZ191615_dentary_min.csv
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Oncorhynchus_tshawytscha_UMMZuncat_dentary_max.csv
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Oncorhynchus_tshawytscha_UMMZuncat_dentary_min.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_dentary_anterior_max.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_dentary_anterior_min.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_dentary_posteroventral_max.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_dentary_posteroventral_min.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_rib_max.csv
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Osteoglossum_bicirrhosum_MNHNICOS00630_rib_min.csv
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Pimelodella_gracilis_UMMZ204550_dentary_max.csv
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Pimelodella_gracilis_UMMZ204550_dentary_min.csv
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Polypterus_delhezi_OOcoll_dentary_max.csv
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Polypterus_delhezi_OOcoll_dentary_min.csv
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Salmo_trutta_UMMZuncat_dentary_max.csv
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Salmo_trutta_UMMZuncat_dentary_min.csv
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Salvelinus_fontinalis_UMMZuncat_dentary_max.csv
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Salvelinus_fontinalis_UMMZuncat_dentary_min.csv
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Savelinus_namaycush_UMMZ177542_dentary_max.csv
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Savelinus_namaycush_UMMZ177542_dentary_min.csv
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Serrasalmus_spilopleura_MNHNICOS01027_dentary_max.csv
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Serrasalmus_spilopleura_MNHNICOS01027_dentary_min.csv
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Stenodus_leucichthys_UMMZ187119_dentary_max.csv
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Stenodus_leucichthys_UMMZ187119_dentary_min.csv
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Stenodus_leucichthys_UMMZ187119_rib_max.csv
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Stenodus_leucichthys_UMMZ187119_rib_min.csv
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Tinca_tinca_MNHNICOS00585_dentary_max.csv
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Tinca_tinca_MNHNICOS00585_dentary_min.csv
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Abstract
These data sheets (in the .csv format) are generated from the software VGStudioMax. They stem from the segmenting of tomograms (digital 'slices') obtained with PPC-SRµCT (synchrotron microtomography) of modern ray-finned fish bones. The osteocyte lacunae (bone cell spaces) were segmented out of the bone mineral matrix, and analysed with the 'Porosity/Inclusion' module to automatically obtain a set of measurements. These include (but are not limited to): osteocyte lacuna volumes (µm³), position in the x, y and z axis and range of tomogram gray values.
Each data sheet corresponds to one set of segmented objects (osteocytes lacunae and a few, mostly smaller, unidentified objects) from each PPC-SRµCT tomogram (list of specimens and scans in the accompanying article), with two segmenting thresholds ('min' and 'max') for each tomogram.
The name of each file corresponds to the following convention: 'Genus name' _ 'Species name' _ 'Specimen number'_ 'Bone' _ 'Location in bone (when appropriate)' _ 'Segmenting threshold'