Scanning transmission electron microscopy data (STEM) from: Early salt-induced kidney remodeling in Dahl salt-sensitive rats
Data files
Sep 10, 2026 version files 5.44 GB
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01_High_Salt_Diet_raw_czi.zip
1.41 GB
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02_Low_Salt_Diet_raw_czi.zip
1.36 GB
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03_High_Salt_Diet_ACE_raw_czi.zip
2.67 GB
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README.md
2.05 KB
Abstract
Excess salt is a major contributor to hypertension and hypertensive kidney injury, yet the early molecular events linking salt exposure to kidney damage remain incompletely understood. The Dahl salt-sensitive rat is a well-established model of salt-induced hypertension, but early metabolic and transcriptional remodeling in the kidney has not been fully characterized. We investigated early kidney alterations in 35 Dahl salt-sensitive rats fed a high-sodium (HSD 01_High_Salt_Diet) or low-sodium diet (LSD 02_Low_Salt_Diet). A subgroup of HSD-fed rats received the ACE (03_High_Salt_Diet+ACE) inhibitor imidapril at a subdepressor dose (1 mg/kg/day) to examine blood pressure-independent effects. Kidney tissue from 12-week-old animals was analyzed using histology, electron microscopy, transcriptomics, metabolomics, and angiotensin peptide profiling HSD-fed rats developed hypertension by week 9 and showed early kidney remodeling by week 12, including metabolic and transcriptional alterations suggestive of disrupted tricarboxylic acid cycle activity and impaired oxidative phosphorylation. Intrakidney angiotensin I, II, and angiotensin 1–7 levels were reduced under HSD. Subdepressor ACE inhibition did not significantly alter blood pressure, kidney injury, angiotensin peptide levels, or the transcriptional and metabolic alterations observed in HSD-fed animals. These findings indicate that high salt intake induces early metabolic and fibrotic kidney remodeling that is not reversed by subdepressor ACE inhibition.
Dataset DOI: 10.5061/dryad.xwdbrv1vf
Description of the data and file structure
Files:
- 01_High_Salt_Diet_raw_czi.zip
- 02_Low_Salt_Diet_raw_czi.zip
- 03_High_Salt_Diet_ACE_raw_czi.zip
Scanning transmission electron microscopy (STEM) was performed to assess ultrastructural alterations in kidney tissue. Glomerular and tubular ultrastructure was examined to identify early morphological changes associated with high-salt-induced kidney remodeling. These kidney tissues were sectioned and analyzed by STEM. Here we deposited three representative scanning transmission electron microscopy images.
The data include:
- 01_High_Salt_Diet_raw_czi
- 02_Low_Salt_Diet_raw_czi
- 03_High_Salt_Diet+ACE_raw_czi
Parameters
The data were acquired with pixel sizes of 5 nm or 2 nm. The resulting image dimensions depended on the selected field of view and zoom factor.
Naming convention
The file names consist of the image number and the diet.
Code/software
The dataset consists of micrographs in the .czi format, each individually archived in a ZIP file. To view these files, users can utilize the free Zeiss ZEN lite software accessible via the provided link.
https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html
Please note that downloading the application requires a Zeiss user account. During registration, providing your company name and address is mandatory to proceed with the installation. The installer can be downloaded afterwards, which will launch a window displaying a selection of software from Zeiss. First, select 'ZEN Lite', then read and accept the terms and conditions to begin the installation process.
To open the micrographs within the software, the data must be extracted using a compatible extraction tool of your choice.
Electron microscopy
Kidney samples were processed for transmission and scanning transmission electron microscopy (STEM) using standard fixation, embedding, and staining procedures, as described in the Supplementary Methods of the associated publication. Briefly, ultrathin sections were imaged on a Tecnai G2 TEM (Thermo Fisher Scientific, Eindhoven, Netherlands) and correlated with high-resolution STEM overviews (ZEISS FE-SEM Sigma 500, Vienna, Austria). Image analysis was performed by a blinded pathologist using ImageSP Viewer (SYSPROG, Minsk, Belarus) and the built-in measuring tools. For each animal, data from up to four sections averaged.
