Data from: Intraspecific plant chemodiversity at plot level has contrasting effects on arthropod functional groups
Data files
Sep 16, 2025 version files 1.59 MB
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1._Herbivores_2021.csv
509.29 KB
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2._Herbivores_2022.csv
349.61 KB
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3._Herbivores_2023.csv
121.41 KB
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4._PA_chemotypes.csv
1.75 KB
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5._Flower_visitors_2021.csv
14.54 KB
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6._Predators_2021.csv
310.79 KB
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7._Predators_2022.csv
195.10 KB
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8._Predators_2023.csv
83.92 KB
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README.md
7.66 KB
Abstract
Plant chemistry mediates interactions between plants and their environment. While intraspecific chemodiversity at the individual plant level is well-studied, the effects of chemodiversity at the plant community level on arthropod interactions need more attention. We conducted a field experiment to test how intraspecific chemodiversity affects plant-arthropod interactions. We manipulated plots of Tanacetum vulgare L., varying in chemotype richness and composition, and monitored four arthropod functional groups (herbivores, flower visitors, predators, and ants) over three seasons. We hypothesized that higher plot-level chemotype richness would enhance occurrence across all studied arthropod groups but have functional group-specific effects on abundance, resulting in reduced herbivore and ant abundance and increased flower visitor and predator abundance with increased chemotype richness. Using mixed models, we found that increasing plot-level chemotype richness had a limited effect on most arthropod group occurrences but led to significant changes in abundance. Increasing chemotype richness decreased herbivore abundance, while it increased flower visitor abundance. Predatory arthropods and ants remained largely unaffected. Furthermore, we found that the presence of specific plant chemotypes within a plot had variable effects for herbivores across years, as some chemotypes initially promoted higher abundances but were associated with lower abundances in the later years. We also found that the presence of specific chemotypes had a positive effect on the abundances of various flower visitor taxa. Predators and ants, on the other hand, showed weaker and more variable responses to specific chemotypes. Specifically, higher chemotype richness reduced the abundance of herbivores such as Uroleucon tanaceti (2022 and 2023) and Brachycaudus cardui (2023), while increasing visitation by flower visitors. These results highlight the role of plant chemodiversity in shaping insect communities and influencing ecosystem dynamics.
This README.txt file was generated on 20240613 by Lina Ojeda-Prieto
GENERAL INFORMATION
Raw data used for the following paper:
Ojeda-Prieto et al. (2025). Increasing plant chemical diversity at plot level has contrasting effects on arthropod functional groups
Author Information
Investigator Contact Information
Name: Lina Ojeda-Prieto
Institution: Technical University of Munich
Address: Hans-Carl-von-Carlowitz Platz 2. Freising, Germany
Email: lina.ojeda@tum.de; lina.ojedaprieto@gmail.com
Date of data collection: 2021, 2022 ,and 2023
Geographic location of data collection: Jena, Germany
Data collected by Lina Ojeda-Prieto and Elicer L. Moreno
DATA-SPECIFIC INFORMATION FOR:
1._Herbivores_2021.csv
A. Number of variables: 28
B. Number of cases/rows: 6552
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Level – Plot-level chemotype richness (1, 2, 3, 6)
- Chemotype – Plant chemotype ID (6 different chemotypes)
- Daughter – Plant daughter ID (18 different daughters)
- Date – Date of survey in 2021
- MF – M. fuscoviride absence/presence (0/1)
- MF_W – Number of winged M. fuscoviride
- MF_U – Number of unwinged M. fuscoviride
- MF_T – Total number of M. fuscoviride
- MT – M. tanacetaria absence/presence (0/1)
- MT_W – Number of winged M. tanacetaria
- MT_U – Number of unwinged M. tanacetaria
- MT_T – Total number of M. tanacetaria
- UT – U. tanaceti absence/presence (0/1)
- UT_W – Number of winged U. tanaceti
- UT_U – Number of unwinged U. tanaceti
- UT_T – Total number of U. tanaceti
- AF – A. fabae absence/presence (0/1)
- AF_W – Number of winged A. fabae
- AF_U – Number of unwinged A. fabae
- AF_T – Total number of A. fabae
- BC – B. cardui absence/presence (0/1)
- BC_W – Number of winged B. cardui
- BC_U – Number of unwinged B. cardui
- BC_T – Total number of B. cardui
2._Herbivores_2022.csv
A. Number of variables: 28
B. Number of cases/rows: 4366
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Level – Plot-level chemotype richness (1, 2, 3, 6)
- Chemotype – Plant chemotype ID (6 different chemotypes)
- Daughter – Plant daughter ID (18 different daughters)
- Date – Date of survey in 2022
- MF – M. fuscoviride absence/presence (0/1)
- MF_W – Number of winged M. fuscoviride
- MF_U – Number of unwinged M. fuscoviride
- MF_T – Total number of M. fuscoviride
- MT – M. tanacetaria absence/presence (0/1)
- MT_W – Number of winged M. tanacetaria
- MT_U – Number of unwinged M. tanacetaria
- MT_T – Total number of M. tanacetaria
- UT – U. tanaceti absence/presence (0/1)
- UT_W – Number of winged U. tanaceti
- UT_U – Number of unwinged U. tanaceti
- UT_T – Total number of U. tanaceti
- AF – A. fabae absence/presence (0/1)
- AF_W – Number of winged A. fabae
- AF_U – Number of unwinged A. fabae
- AF_T – Total number of A. fabae
- BC – B. cardui absence/presence (0/1)
- BC_W – Number of winged B. cardui
- BC_U – Number of unwinged B. cardui
- BC_T – Total number of B. cardui
3._Herbivores_2023.csv
A. Number of variables: 28
B. Number of cases/rows: 1512
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Level – Plot-level chemotype richness (1, 2, 3, 6)
- Chemotype – Plant chemotype ID (6 different chemotypes)
- Daughter – Plant daughter ID (18 different daughters)
- Date – Date of survey in 2023
- MF – M. fuscoviride absence/presence (0/1)
- MF_W – Number of winged M. fuscoviride
- MF_U – Number of unwinged M. fuscoviride
- MF_T – Total number of M. fuscoviride
- MT – M. tanacetaria absence/presence (0/1)
- MT_W – Number of winged M. tanacetaria
- MT_U – Number of unwinged M. tanacetaria
- MT_T – Total number of M. tanacetaria
- UT – U. tanaceti absence/presence (0/1)
- UT_W – Number of winged U. tanaceti
- UT_U – Number of unwinged U. tanaceti
- UT_T – Total number of U. tanaceti
- AF – A. fabae absence/presence (0/1)
- AF_W – Number of winged A. fabae
- AF_U – Number of unwinged A. fabae
- AF_T – Total number of A. fabae
- BC – B. cardui absence/presence (0/1)
- BC_W – Number of winged B. cardui
- BC_U – Number of unwinged B. cardui
- BC_T – Total number of B. cardui
4._PA_chemotypes.csv
A. Number of variables: 4
B. Number of cases/rows: 504
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Chemotype – Plant chemotype ID (6 different chemotypes)
- Daughter – Plant daughter ID (18 different daughters)
- Block – Block number (1 to 6)
5._Flower_visitors_2021.csv
A. Number of variables: 5
B. Number of cases/rows: 251
C. Variable List
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Level – Plot-level chemotype richness (1, 2, 3, 6)
- Date – Date of survey in 2021
- Abundance – Number of flower visitors observed
6._Predators_2021.csv
A. Number of variables: 6
B. Number of cases/rows: 6552
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Date – Date of survey in 2021
- Predators – Number of predators observed
7._Predators_2022.csv
A. Number of variables: 6
B. Number of cases/rows: 4366
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Date – Date of survey in 2022
- Predators – Number of predators observed
8._Predators_2023.csv
A. Number of variables: 6
B. Number of cases/rows: 1512
C. Variable List
- Plant – Assigned plant number (1 to 504)
- Block – Block number (1 to 6)
- Plot – Assigned plot number (1 to 84)
- Pos – Position of the plant within each plot (1 to 6)
- Date – Date of survey in 2023
- Predators – Number of predators observed
Notes on Missing Data
Cells containing NA indicate that data were not available. Missing values occur for two main reasons:
- Weather interruptions: Insects are highly sensitive to weather. On some sampling dates, data collection was interrupted (e.g., due to strong rain). In such cases, incomplete block counts were excluded, and only data from completed blocks were used.
- Plant availability: Not all plants were present or had regrown at the same rate, particularly early in the season after cutting from the previous year. If a plant was not available for sampling on a given date, its values are recorded as
NA.
Thus, NA in the dataset means “data not available due to weather or plant absence,” and not “not applicable.”
Data collection
From 2021 to 2023, we assessed herbivores, flower visitors, predators, and ants. Each year, herbivore communities were monitored by counting individual aphids on the plants from their first appearance until nearly none were found. Although the focus was on aphids, other herbivores were scarce. Therefore, the generalization to herbivores here reflects predominantly aphids. Counts were conducted 13 times from June to August 2021, eight times from May to August 2022, and three times from June to August 2023. Each count, executed within a day between 7 h and 19 h, involved a meticulous scan of each plant, which started from the tip of each stem and proceeded to the end, examining both sides of each leaf. When multiple aphid species were present on a plant, we recorded the total number of each. In cases of high aphid densities (>100), we estimated the total by counting aphids on 1 cm of stem or 1 cm2 of leaf three times in different stems and leaves for each plant, then multiplying the average by the estimated lengths of stems (in cm) or the estimated areas of leaves (in cm2) colonized by the aphids. We used plot-level occupancy and cumulative plot-level number of aphids to analyze occurrence and abundance.
Flower visitors were assessed by counting the flower heads of individual plants during the flower-visiting recording. Flower visitors were counted three times in July 2021 and once in August 2021. Surveys lasted three minutes per plot and were conducted randomly from 9h to 15h under optimal weather conditions (no gusts of wind or precipitation). Flower visitors were identified at the order level. We used presence-absence data to analyze the effects of CR and chemotype presence on occurrence. However, as CR and individual chemotypes influence reproductive traits in our system (Ojeda‐Prieto et al., 2024), flower visitor abundance per flower head (visitation rate) assessed effects on abundance.
Predatory arthropods and ants on individual plants were recorded during herbivore counting for 2021, 2022, and the day after in 2023. Predators were classified into taxa/feeding guilds (Araneae, Coleoptera, Dermaptera, Diptera, Hemiptera, and Hymenoptera), specifying aphid parasitoids and parasitized aphids (counted as mummies found). Ant presence on plants, but not abundance, was noted. Predator and ant occurrences and parasitized aphid abundance were used for analyses for the three seasons. In 2023, predator and ant abundances were also analyzed.
Statistical analyses
Statistical analyses were conducted using R version 4.1.2 and RStudio 2023.09.1 (R Core Team, 2021). All statistics were performed at the plot level. The effects of chemotype presence and CR on the occurrence of herbivores, flower visitors, predators, and ants were assessed through binomial Generalized Linear Mixed-effect Models (GLMM) using the ‘lme4’ package (Bates et al., 2015). Linear Mixed-Effect Models (LMM) and Zero-Inflated Negative Binomial Models (ZINB), using the 'glmmTMB' package (Brooks et al., 2017), modeled the effect on abundances. P-values were estimated by type II Wald-Chi-Squared tests using the Anova() function (‘car’ package; Fox & Weisberg, 2019). Data visualization used academic-licensed Biorender® and 'ggplot2’ (Wickham, 2009), ‘grid’ (R Core Team, 2021), ‘gridExtra’ (Auguie et al., 2017), ‘ggpubr’ (Kassambara, 2020), and ’DHARMa’ (Hartig, 2022) packages.
Effects of chemotype richness and chemotype presence on arthropod taxa occurrence and abundance
Binomial GLMMs assessed the effect of CR and chemotype presence on occurrence. LMMs and ZINB tested the effects on abundance. Data were analyzed at the arthropod group and lower taxonomic levels (when indicated). Data were analyzed cumulatively for each year and for each independent sampling time.
References
Auguie, B., Antonov, A., & Auguie, M. B. (2017). gridExtra: Miscellaneous functions for “grid” graphics.
Bates, D., Maechler, M., Bolker, B., & Walker, S. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67(1), 1–48.
Brooks, M. E., Kristensen, K., Van Benthem, J., Magnusson, A., Berg, C. W., Nielsen, A., Skaug, H. J., Maechler, M., & Bolker, B. M. (2017). glmmTMB balances speed and flexibility among packages for zero-inflated generalized linear mixed modeling. The R Journal, 9(2), 378–400.
Fox, J., & Weisberg, S. (2019). An {R} companion to applied regression (Third Edition). Thousand Oaks CA: Sage.
Hartig, F. (2022). DHARMa: Residual diagnostics for hierarchical (multi-level / mixed) regression model. https://cran.r-hub.io/web/packages/DHARMa/DHARMa.pdf
Kassambara, A. (2020). ggpubr: “ggplot2” based publication ready plots.
Ojeda-Prieto, L., Medina-van Berkum, P., Unsicker, S. B., Heinen, R., & Weisser, W. W. (2025). Intraspecific chemical variation of Tanacetum vulgare affects plant growth and reproductive traits in field plant communities. Plant biology (Stuttgart, Germany), 27(5), 785–801. https://doi.org/10.1111/plb.13646
R Core Team. (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing.
Wickham, H. (2009). ggplot2: Elegant graphics for data analysis. Springer New York. https://doi.org/10.1007/978-0-387-98141-3
