Data from: Productive foraging grounds enhance maternal condition and offspring quality in a capital breeding species
Data files
Oct 14, 2024 version files 610.89 KB
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All_SIA_DATA_Ratios_2024_Published.csv
35.61 KB
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AllSkinAndBloodTurtles_Published.csv
54.29 KB
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AllTurt.lesseggfat_Published.csv
80.71 KB
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Combined_PlasmaSkin_SIA_20190411_Published.csv
20.39 KB
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Full.Blood_Tur.lesseggfat_Published.csv
71.25 KB
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HatcheryData_20190319_Published.csv
279.50 KB
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NestSuccess_20190610_Published.csv
37.88 KB
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README.md
12.47 KB
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Run1_2_3_4_5_Skin_DriftCorrected_20191101_Published.csv
9.88 KB
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Run1_2_3_Plasma_DriftCorrected_20190411_Published.csv
8.92 KB
Abstract
Feeding ecology is an essential component of an organism's life, but foraging comes with risks and energetic costs. Species in which populations exhibit more than one feeding strategy, such as sea turtles, are good systems for investigating how feeding ecology impacts life-history traits, reproduction and carried over effects across generations. Here, we investigated how the feeding ecology of loggerhead sea turtles (Caretta caretta) nesting at the Cabo Verde archipelago correlates with reproductive outputs and offspring quality. We determined the feeding ecology of female turtles before and during the breeding season from stable isotope analysis of carbon and nitrogen and correlated isotopic ratio with female and offspring traits. We found that female turtles feeding at higher trophic positions produced larger clutches. We also found that females with higher δ13C values, typical of productive foraging areas, had greater fat reserves, were less likely to be infected by leech parasites and produced heavier offspring. The offspring of infected mothers with higher δ13C values performed best in crawling and self-righting trials than those of non-infected mothers with higher δ13C values. This study shows adult female loggerheads that exploit productive areas build capital reserves that impact their reproductive success and multiple proxies for offspring quality. Overall, our findings provide valuable insights into the complex interplay between feeding ecology and reproductive success, and reveal the transgenerational carry-over effects of both feeding ecology and health on offspring quality in sea turtles.
https://doi.org/10.1002/ece3.70137
The adult and hatchling data files to run the analysis and produce the plots for the above study.
Description of the data and file structure
Data Files:
AllSkinAndBloodTurtles_Published.csv - All turtle data that had skin and blood samples taken for this study.
Turtle_ID - Unique turtle ID number used to track samples
Year - Sample Year
Appearance - Sighting number of the individual turtle in that season
Original Name - First sighting Sample ID to allow sample matching
Island - What island the sample was taken on
Beach - what beach the sample was taken on
Sample_Date - sample date
Sample_Time - sample time
By - who took the sample
FusedPIT_Letter - PIT tag number with additional letter to stop excel reformatting in csv
Metal_Tag1 - Metal tag number (left)
Metal_Tag2 - Metal tag number (right)
CCL[cm] - Curved Carapace Length in centimeters average of three measurements
CCW[cm] - Curved Carapace Width in centimeters average of three measurements
Cloacal_Parasites - if cloacal parasites were present (Yes, No, NA (means was not able to verify))
Amount_cloacal_p - cloacal parasite count
Barnacles - if any barnacles were present on the carapace of the turtle
Amount_Barnacles - count of any barnacles were present on the carapace of the turtle
Other_Parasites - if any other parasites that do not fall into the above categories were present.
Blood_Sample - if a blood sample was taken
Fat(mm) - Body fat measured around the latissimus dorsi muscle average of three measurements
Number eggs - number of eggs laid in this encounter.
AllTurt.lesseggfat_Published.csv - All turtle data that had skin and blood samples taken for this study with outliers removed.
Turtle_ID - Unique turtle ID number used to track samples
Year - Sample Year
Appearance - Sighting number of the individual turtle in that season
Original Name - First sighting Sample ID to allow sample matching
Island - What island the sample was taken on
Beach - what beach the sample was taken on
Sample_Date - sample date
Sample_Time - sample time
By - who took the sample
FusedPIT_Letter - PIT tag number with additional letter to stop excel reformatting in csv
Metal_Tag1 - Metal tag number (left)
Metal_Tag2 - Metal tag number (right)
CCL[cm] - Curved Carapace Length in centimeters average of three measurements
CCW[cm] - Curved Carapace Width in centimeters average of three measurements
Cloacal_Parasites - if cloacal parasites were present (Yes, No, NA (means was not able to verify))
Amount_cloacal_p - cloacal parasite count
Barnacles - if any barnacles were present on the carapace of the turtle
Amount_Barnacles - count of any barnacles were present on the carapace of the turtle
Other_Parasites - if any other parasites that do not fall into the above categories were present.
Blood_Sample - if a blood sample was taken
Fat(mm) - Body fat measured around the latissimus dorsi muscle average of three measurements
Number eggs - number of eggs laid in this encounter (clutch size)
Skin_13C - Skin stable isotope - d13C
Skin_15N - Skin stable isotope - d15N
PartOfSeason - Whether in early, middle, or late period of the season
FatReserves_new - Fat Reserves calculated from the residuals of the linear model of: Fat(mm) ~ CCL
Resid_FatRes_PartSeason - Residuals of FatReserves_new ~ PartOfSeason
Resid_CCL_Para - Residuals of CCL ~ Cloacal_Parasites
Resid_15N_Season - Residuals of Skin_15N ~ PartOfSeason
Resid_CCL_13C - Residuals of CCL ~ Skin_13C
Resid_CluSize_PartSeason - Residuals of Number eggs ~ PartOfSeason
Resid_CCLPara_ClutSeason - Residuals of Resid_CCL_Para ~ Resid_CluSize_PartSeason
Resid_Skin15N_Skin13C - Residuals of Skin_15N ~ Skin_13C
Resid_ClutPartS_15N13C - Residuals of Resid_CluSize_PartSeason ~ Resid_Skin15N_Skin13C
Resid_S15N13C_PartSeason - Residuals of Resid_Skin15N_Skin13C ~ PartOfSeason
Resid_ClutPartS_15N13CPartS - Residuals of Resid_CluSize_PartSeason ~ Resid_S15N13C_PartSeason
Resid_FatRes_R15N_13C - Residuals of FatReserves_new ~ Resid_Skin15N_Skin13C
Resid_Clutch_RFat15N13C - Residuals of Number eggs ~ Resid_FatRes_R15N_13C
NestSuccess_20190610_Published.csv - CSV file containing the nest success data for each nest moved and monitored
Hatchery - Hatchery ID
Nest # - Nest Number
Location - Nest Beach
Date Laid - Date laid
54 Days Inc. - 54 days since laid (expected hatch date)
EggOldCount - egg count at beach
ClutchSize - egg count at hatchery
Sample - Sample ID
New PIT - New PIT if inserted
New Metal_L - New metal tag number if used (Left)
New Metal_R - New metal tag number if used (Right)
Found PIT - PIT if found
Found Metal_L - Metal tag number if found (Left)
Found Metal_R - Metal tag number if found (Right)
Fitness test - If fitness test done.
Hatch Date - Date of nest hatching
Excavation Date - Date of nest excavation
Emerged Live - How many hatchlings emerged from the next before excavation
LFT - Upon excavation live full term hatchlings found
DFT - Upon excavation dead full term hatchlings
LP - Upon excavation live partially hatched hatchlings
DP- Upon excavation dead partially partially hatched term hatchlings
UH Total - Unhatched total
Predated - Predated hatchlings
Undetermined - Hatchlings with an unknown fate
Total Eggs - Total number
EmergedSuccessNum - Hatchlings emerged from the nest (hatchlings/clutch size)
EmergedSuccessPerct - Percent of hatchlings emerged from the nest (hatchlings/clutch size X 100)
LiveSuccessNum - Hatchlings emerged from the nest (emerged+excavated live in nest/clutch size)
LiveSuccessPerct - Percent of hatchlings emerged from the nest (emerged+excavated live in nest/clutch size X 100)
Run1_2_3_Plasma_DriftCorrected_20190411_Published.csv - the stable isotope results for the plasma sample data collected from the turtles for this study
Turtle_ID - Turtle Sample ID
SampleWeight - Sample weight in μg
SIA_15N - Plasma δ15N values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
SIA_13C - Plasma δ13C values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
RunNumber - Sample run number
Run1_2_3_4_5_Skin_DriftCorrected_20191101_Published.csv - the stable isotope results for the skin sample data collected from the turtles for this study
Turtle_ID - Turtle Sample ID
SampleWeight - Sample weight in μg
SIA_15N - Skin δ15N values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
SIA_13C - Skin δ13C values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
RunNumber - Sample run number
HatcheryData_20190319.csv - the hatchling fitness test data
Island - Island in Cabo Verde
NestID - Nest ID
Date - Date of fitness test
Hatchery - Hatchery ID
Turtle_ID - Turtle Sample ID
PIT - Maternal turtle PIT Tag Number with additional letter to stop excel reformatting in csv
Metal_L - Maternal metal tag number if found (Left)
Metal_R - Maternal metal tag number if found (Left)
TimeOfEmergence - Time of nest emergence
StartTest - Start of fitness tests
EndTest - End of fitness tests
SampledBy - Hatchling fitness test sampler
Hatchling - Hatchling ID for each test
Weight.g. - Hatchling weight in grams
SCL.mm. - Hatchling length in mm
SCW.mm. - Hatchling width in mm
No_Scute_L - Number of left side scutes on hatchling
No_Scute_M - Number of middle scutes on hatchling
No_Scute_R - Number of right side scutes on hatchling
Flip_1 - Flip time 1 in seconds
Flip_2 - Flip time 2 in seconds
Flip_3 - Flip time 3 in seconds
Run_1 - Run time 1 in seconds
Run_2 - Run time 2 in seconds - if stop watch not stopped this time is then taken from Run_1 for next column
Calc_Run_2 - Run time 2 in seconds - if the stop watch was not stopped take run time 1 from run time 2
IncDur - Nest incubation duration
Combined_PlasmaSkin_SIA_20190411_Published.csv - the combined stable isotope results for skin and plasma sample data collected from the turtles for this study
Turtle_ID - Turtle Sample ID
SampleWeight - Sample weight in μg
SIA_15N - Skin δ15N values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
SIA_13C - Skin δ13C values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
RunNumber - Sample run number
Type - Skin or Plasma sample
Full.Blood_Tur.lesseggfat.csv - All turtle data that had blood samples taken for this study with outliers removed.
Turtle_ID - Unique turtle ID number used to track samples
Year - Sample Year
Appearance - Sighting number of the individual turtle in that season
Original Name - First sighting Sample ID to allow sample matching
Island - What island the sample was taken on
Beach - what beach the sample was taken on
Sample_Date - sample date
Sample_Time - sample time
By - who took the sample
FusedPIT_Letter - PIT tag number with additional letter to stop excel reformatting in csv
Metal_Tag1 - Metal tag number (left)
Metal_Tag2 - Metal tag number (right)
CCL[cm] - Curved Carapace Length in centimeters average of three measurements
CCW[cm] - Curved Carapace Width in centimeters average of three measurements
Cloacal_Parasites - if cloacal parasites were present (Yes, No, NA (means was not able to verify))
Amount_cloacal_p - cloacal parasite count
Barnacles - if any barnacles were present on the carapace of the turtle
Amount_Barnacles - count of any barnacles were present on the carapace of the turtle
Other_Parasites - if any other parasites that do not fall into the above categories were present.
Blood_Sample - if a blood sample was taken
Fat(mm) - Body fat measured around the latissimus dorsi muscle average of three measurements
Number eggs - number of eggs laid in this encounter.
Skin_13C - Skin stable isotope - d13C
Skin_15N - Skin stable isotope - d15N
PartOfSeason - Whether in early, middle, or late period of the season
FatReserves_new - Fat Reserves calculated from the residuals of the linear model of: Fat(mm) ~ CCL
Resid_FatRes_PartSeason - Residuals of FatReserves_new ~ PartOfSeason
Resid_CCL_Para - Residuals of CCL ~ Cloacal_Parasites
Resid_15N_Season - Residuals of Skin_15N ~ PartOfSeason
Resid_CCL_13C - Residuals of CCL ~ Skin_13C
Resid_CluSize_PartSeason - Residuals of Number eggs ~ PartOfSeason
Resid_CCLPara_ClutSeason - Residuals of Resid_CCL_Para ~ Resid_CluSize_PartSeason
Resid_Skin15N_Skin13C - Residuals of Skin_15N ~ Skin_13C
Resid_ClutPartS_15N13C - Residuals of Resid_CluSize_PartSeason ~ Resid_Skin15N_Skin13C
Resid_S15N13C_PartSeason - Residuals of Resid_Skin15N_Skin13C ~ PartOfSeason
Resid_ClutPartS_15N13CPartS - Residuals of Resid_CluSize_PartSeason ~ Resid_S15N13C_PartSeason
Resid_FatRes_R15N_13C - Residuals of FatReserves_new ~ Resid_Skin15N_Skin13C
Resid_Clutch_RFat15N13C - Residuals of Number eggs ~ Resid_FatRes_R15N_13C
Plasma_15N - Plasma stable isotope - d15N
Plasma_13C - Plasma stable isotope - d13C
Resid_Pl13C_Season - Residuals of Plasma_13C ~ PartOfSeason
Resid_Pl15N_Season - Residuals of Plasma_15N ~ PartOfSeason
Resid_CCL_PartSeason - Residuals of CCL ~ PartOfSeason
All_SIA_DATA_Ratios_2024_Published.csv - Ratio of C:N data from running stable isotope samples
Row - Row Number
Turtle_ID - Turtle Sample ID
Weight_Sample_g
N_ug - Nitrogen weight in sample in μg
d15N - δ15N values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
C_ug - Carbon weight in sample in μg
d13C - δ13C values drift corrected by the continuous flow isotope ratio mass spectrometer - Integra2, Sercon (Crewe, United Kingdom).
Run - Sample run number
Ratio - ratio of the weight of carbon and nitrogen
Tissue - Skin or Plasma sample
Missing data code: NA
Code Files:
Code_MaternalFeedingEcologyAltersHatchlingFitnessInACapitalBreedingSpecies_LeilaFouda.R - R code for this project.
All the r code used to run the models in this paper.
PlotsForPaper.R - R code to plot figures in this project.
All the r code used to make the plots in this paper.
Code/Software
The code was created to be run in R was processed in RStudio.
- Fouda, Leila; Negus, Stuart; Lockley, Emma et al. (2024). Data from: Productive foraging grounds enhance maternal condition and offspring quality in a capital breeding species. Zenodo. https://doi.org/10.5281/zenodo.10492894
- Fouda, Leila; Negus, Stuart; Lockley, Emma et al. (2024). Data from: Productive foraging grounds enhance maternal condition and offspring quality in a capital breeding species. Zenodo. https://doi.org/10.5281/zenodo.10492893
- Fouda, Leila; Negus, Stuart R. B.; Lockley, Emma C. et al. (2023). Productive foraging sites enhance maternal health and impact offspring fitness in a capital breeding species [Preprint]. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2023.10.27.563439
- Fouda, Leila; Negus, Stuart R. B.; Lockley, Emma C. et al. (2024). Productive foraging grounds enhance maternal condition and offspring quality in a capital breeding species. Ecology and Evolution. https://doi.org/10.1002/ece3.70137
