Programmable liposome organization via DNA origami templates
Data files
Sep 05, 2025 version files 2.19 GB
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README.md
3.50 KB
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TEM_images.zip
2.19 GB
Abstract
Liposomes are essential vehicles for membrane protein reconstitution and drug delivery, making them vital tools in both in vivo and in vitro studies. However, the lack of robust techniques for the precise arrangement of these synthetic vesicles limits their potential applications. Here, we present a modular polymerization platform based on square DNA origami to template the formation and organization of liposomes. By programming the sequence, number, position, chirality, and flexibility of sticky ends on each square, we assemble uniformly sized liposomes into diverse two-dimensional (2D) arrays, as well as finite lattices and rings. Additionally, we demonstrate stepwise assembly and targeted disassembly, enabling dynamic structural control. These complex liposome architectures represent a significant advancement in the fields of biotechnology, nanotechnology, and bottom-up biology.
Dataset DOI: 10.5061/dryad.k0p2ngfm1
Description of the data and file structure
Square DNA origami (SDO) was designed using cadnano, assembled with an M13-derived scaffold, and purified via glycerol gradient centrifugation. SDO-templated liposomes (STLs) were formed by hybridizing cholesterol-labeled oligos to SDO, followed by lipid rehydration, mixing, dialysis, and iodixanol gradient purification. Polymerization was controlled by thermal annealing, and dynamic behavior was modulated using strand displacement. Samples were analyzed using negative-stain TEM, cryo-EM, and gel electrophoresis to assess structure, assembly, and polymer formation. Cryo-EM data were acquired on a Titan Krios and processed to correct for beam-induced motion.
Files and variables
File: TEM_images.zip
Description: This dataset contains a curated set of representative negative-stain transmission electron microscopy (TEM) images of square DNA origami (SDO) structures and SDO-templated liposomes (STLs). Each image provides visual documentation of the nanostructures' morphology and assembly quality.
The image files are named systematically using the following format:
Structure type: either SDO or STL
Description: a brief label describing the configuration or experimental condition (e.g., “zigzag array v2”)
Serial number: a two-digit identifier for indexing purposes (e.g., “03”)
Access information
The corresponding figure numbers in the main text and Supporting Information are indexed below.
* 1a: SDO_Monomer
* 1b: STL_Monomer_fraction5
* 1c & S4: STL_2D_array; STL_2D_array_TMSD
* 1d & S6: STL_1D_array; SDO_1D_array
* 1e & S7: STL_3layer_array; SDO_3layer_array
* 1f & S8: STL_Zigzag_array_v1; SDO_Zigzag_array_v1
* 1g & S9: STL_Zigzag_array_v2; SDO_Zigzag_array_v2
* 1h & S10: STL_4mer_v1; SDO_4mer_v1
* 1i & S11: STL_8mer_v1; SDO_8mer_v1
* 2a & S14 & S18: STL_5mer_v1; SDO_5mer_v1; STL_9mer_v1; SDO_9mer_v1
* 2b & S15 & S19: STL_4mer_v2; SDO_4mer_v2; STL_7mer_v1; SDO_7mer_v1
* 2c & S16 & S20: STL_3mer_v1; SDO_3mer_v1; STL_5mer_v2; SDO_5mer_v2
* 2d & S17 & S21: STL_3mer_v2; SDO_3mer_v2; STL_5mer_v3; SDO_5mer_v3
* 2e & S22: STL_4mer_v3; SDO_4mer_v3
* 2f & S23: STL_4mer_v4; SDO_4mer_v4
* 2g & S24: STL_5mer_v4; SDO_5mer_v4
* 2h & S25: STL_6mer_v1; SDO_6mer_v1
* 2i & S26: STL_6mer_v2; SDO_6mer_v2
* 2j & S27: STL_8mer_v2
* 2k & S28: STL_9mer_v2; SDO_9mer_v2
* 2l & S29: STL_7mer_v2; SDO_7mer_v2
* 2m & S30: STL_5mer_v5; SDO_5mer_v5
* 2n & S31: STL_5mer_v6; SDO_5mer_v6
* 2o & S32: STL_5mer_v7; SDO_5mer_v7
* 2p & S33: STL_5mer_v8; SDO_5mer_v8
* 2q & S34: STL_7mer_v3
* 2r & S35: STL_6mer_v3; SDO_6mer_v3
* 2s & S36: STL_6mer_v4; SDO_6mer_v4
* 2t & S34: STL_8mer_v3
* 2u & S37: STL_7mer_v4; SDO_7mer_v4
* 2v & S38: STL_9mer_v3; SDO_9mer_v3
* 2w & S39: STL_6mer_v5; SDO_6mer_v5
* 2x & S40-S43: STL_hetero_3mer; STL_hetero_4mer; STL_hetero_5mer; STL_hetero_6mer; SDO_hetero_3mer; SDO_hetero_4mer; SDO_hetero_5mer; SDO_hetero_6mer
* 3a & S44: STL_stepwise_assembly_2mer; STL_stepwise_assembly_3mer; STL_stepwise_assembly_4mer
* 3b & S45: STL_dynamic_disassembly; SDO_dynamic_disassembly
* S2: SDO_2D_array
* S3: STL_Monomer_fraction3; STL_Monomer_fraction4; STL_Monomer_fraction5; STL_Monomer_fraction6
* S12: STL_4mer_v1_RT3h; STL_4mer_v1_4C15h
* S13: SDO_2mer; STL_2mer